Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p37620 Brassica napus HOM05D007254 ORTHO05D009002 8.4e-85 317.0 162 100.0
C02p41140 Brassica napus HOM05D000647 ORTHO05D000174 1.4e-52 209.9 214 59.8
BolC2t10127H Brassica oleracea HOM05D000647 ORTHO05D000174 2.1e-51 206.1 214 58.9
BcaC03g15986 Brassica carinata HOM05D007254 ORTHO05D009002 4.5e-22 108.6 68 82.4
C02p37430 Brassica napus HOM05D007254 ORTHO05D009002 4.5e-22 108.6 68 82.4
BolC2t09755H Brassica oleracea HOM05D007254 ORTHO05D009002 4.5e-22 108.6 68 82.4
A02p23670 Brassica napus HOM05D007254 ORTHO05D009002 5.9e-22 108.2 68 82.4
BraA02t07360Z Brassica rapa HOM05D007254 ORTHO05D009002 5.9e-22 108.2 68 82.4
BcaB05g25281 Brassica carinata HOM05D007254 ORTHO05D009002 8.5e-21 104.4 68 80.9
CARHR074200 Cardamine hirsuta HOM05D007254 ORTHO05D009002 1.5e-20 103.6 65 76.9
Sp5g35520 Schrenkiella parvula HOM05D007254 ORTHO05D009002 1.9e-20 103.2 65 75.4
Aa31LG4G570 Aethionema arabicum HOM05D007254 ORTHO05D009002 3.2e-20 102.4 68 76.5
AT1G80290 Arabidopsis thaliana HOM05D007254 ORTHO05D009002 7.2e-20 101.3 65 76.9
THA.LOC104812613 Tarenaya hassleriana HOM05D007254 ORTHO05D009002 9.4e-20 100.9 70 70.0
Carub.0003s3026 Capsella rubella HOM05D007254 ORTHO05D009002 1.2e-19 100.5 65 76.9
AL2G41210 Arabidopsis lyrata HOM05D007254 ORTHO05D009002 3.6e-19 99.0 65 75.4
Thhalv10000547m.g Eutrema salsugineum HOM05D007254 ORTHO05D009002 4.7e-19 98.6 69 68.1
Cpa.g.sc488.3 Carica papaya HOM05D007254 ORTHO05D009002 6.8e-18 94.7 76 61.8
CSS0032984 Camellia sinensis var. sinensis HOM05D007254 ORTHO05D009002 1.3e-16 90.5 116 38.8
Atru.chr7.2684 Acer truncatum HOM05D007254 ORTHO05D009002 1.7e-16 90.1 70 62.9
Eucgr.C04240 Eucalyptus grandis HOM05D007254 ORTHO05D009002 1.7e-16 90.1 76 60.5
RcHm_v2.0_Chr6g0305491 Rosa chinensis HOM05D007254 ORTHO05D009002 2.8e-16 89.4 70 62.9
Ciclev10010680m.g Citrus clementina HOM05D007254 ORTHO05D009002 3.7e-16 89.0 76 59.2
FAN20G0412 Fragaria x ananassa HOM05D007254 ORTHO05D009002 6.3e-16 88.2 70 62.9
FAN27G2933 Fragaria x ananassa HOM05D007254 ORTHO05D009002 6.3e-16 88.2 70 62.9
Gohir.A12G118100 Gossypium hirsutum HOM05D007254 ORTHO05D009002 6.3e-16 88.2 70 62.9
Cfa013312 Carpinus fangiana HOM05D007254 ORTHO05D009002 8.3e-16 87.8 78 59.0
Gohir.D12G121900 Gossypium hirsutum HOM05D007254 ORTHO05D009002 1.1e-15 87.4 70 61.4
Gorai.008G132700 Gossypium raimondii HOM05D007254 ORTHO05D009002 1.1e-15 87.4 65 64.6
Dinv13245 Davidia involucrata HOM05D007254 ORTHO05D009002 1.4e-15 87.0 66 62.1
FAN15G2622 Fragaria x ananassa HOM05D007254 ORTHO05D009002 1.4e-15 87.0 70 61.4
Prupe.1G455400 Prunus persica HOM05D007254 ORTHO05D009002 1.4e-15 87.0 69 60.9
TWI34G0126 Tripterygium wilfordii HOM05D007254 ORTHO05D009002 1.4e-15 87.0 63 66.7
PGR044G2739 Punica granatum HOM05D007254 ORTHO05D009002 1.8e-15 86.7 77 55.8
Sabra06G0216000 Salix brachista HOM05D007254 ORTHO05D009002 3.1e-15 85.9 76 56.6
Thecc.09G003000 Theobroma cacao HOM05D007254 ORTHO05D009002 3.1e-15 85.9 70 60.0
FvH4_2g36410 Fragaria vesca HOM05D007254 ORTHO05D009002 4.1e-15 85.5 70 61.4
Duzib150G0445 Durio zibethinus HOM05D007254 ORTHO05D009002 9.1e-15 84.3 70 55.7
MD08G1123400 Malus domestica HOM05D007254 ORTHO05D009002 9.1e-15 84.3 76 53.9
MD15G1102400 Malus domestica HOM05D007254 ORTHO05D009002 9.1e-15 84.3 76 53.9
Manes.11G154500 Manihot esculenta HOM05D007254 ORTHO05D009002 1.2e-14 84.0 70 58.6
ECA246G3277 Erigeron canadensis HOM05D007254 ORTHO05D009002 2.0e-14 83.2 95 43.2
Potri.006G278400 Populus trichocarpa HOM05D007254 ORTHO05D009002 2.0e-14 83.2 76 55.3
Haze_21799 Corylus avellana HOM05D007254 ORTHO05D009002 2.7e-14 82.8 78 56.4
ClCG05G026310 Citrullus lanatus HOM05D007254 ORTHO05D009002 3.5e-14 82.4 71 56.3
PSO170G3828 Papaver somniferum HOM05D007254 ORTHO05D009002 4.5e-14 82.0 72 50.0
TAR636G2989 Trochodendron aralioides HOM05D007254 ORTHO05D009002 4.5e-14 82.0 65 60.0
CsaV3_3G047290 Cucumis sativus L. HOM05D007254 ORTHO05D009002 5.9e-14 81.6 71 56.3
MELO3C003600.2 Cucumis melo HOM05D007254 ORTHO05D009002 7.7e-14 81.3 71 54.9
QL12p025906 Quercus lobata HOM05D007254 ORTHO05D009002 7.7e-14 81.3 70 58.6
CANSAT25G1896 Cannabis sativa HOM05D007254 ORTHO05D009002 1.0e-13 80.9 82 50.0
PSO063G7066 Papaver somniferum HOM05D007254 ORTHO05D009002 1.3e-13 80.5 72 48.6
Lsat_1_v5_gn_3_26521 Lactuca sativa HOM05D007254 ORTHO05D009002 1.7e-13 80.1 68 55.9
MBI16_g18202_MAGBIO Magnolia biondii HOM05D007254 ORTHO05D009002 1.7e-13 80.1 69 53.6
Phvul.002G252600 Phaseolus vulgaris HOM05D007254 ORTHO05D009002 1.7e-13 80.1 79 55.7
VMungo0251G2754 Vigna mungo HOM05D007254 ORTHO05D009002 1.7e-13 80.1 79 57.0
arahy.Tifrunner.gnm1.ann1.2B8833 Arachis hypogaea HOM05D007254 ORTHO05D009002 6.5e-13 78.2 72 54.2
Aqoxy7G02676 Aquilegia oxysepala HOM05D007254 ORTHO05D009002 8.5e-13 77.8 92 40.2
HanXRQChr12g0384041 Helianthus annuus HOM05D007254 ORTHO05D009002 8.5e-13 77.8 64 53.1
Sed0008272 Sechium edule HOM05D007254 ORTHO05D009002 8.5e-13 77.8 69 52.2
DCAR_004577 Daucus carota HOM05D007254 ORTHO05D009002 2.5e-12 76.3 65 53.8
CiPaw.08G021500 Carya illinoinensis HOM05D007254 ORTHO05D009002 4.2e-12 75.5 77 54.5
AUR62020641 Chenopodium quinoa HOM05D007254 ORTHO05D009002 9.5e-12 74.3 64 54.7
vmacro21974 Vaccinium macrocarpon HOM05D007254 ORTHO05D009002 9.5e-12 74.3 72 52.8
arahy.Tifrunner.gnm1.ann1.CY5H5G Arachis hypogaea HOM05D007254 ORTHO05D009002 1.2e-11 73.9 72 52.8
Glyma.15G027100 Glycine max HOM05D007254 ORTHO05D009002 1.6e-11 73.6 71 53.5
Pp3c16_2260 Physcomitrium patens HOM05D007254 ORTHO05D009002 3.6e-11 72.4 62 53.2
PGSC0003DMG400014857 Solanum tuberosum HOM05D007254 ORTHO05D009002 3.6e-11 72.4 70 50.0
Lj3g0004031 Lotus japonicus HOM05D007254 ORTHO05D009002 4.7e-11 72.0 64 57.8
Solyc08g006080.1 Solanum lycopersicum HOM05D007254 ORTHO05D009002 4.7e-11 72.0 79 49.4
Sopen08g002050 Solanum pennellii HOM05D007254 ORTHO05D009002 4.7e-11 72.0 79 49.4
Nitab4.5_0004859g0100 Nicotiana tabacum HOM05D007254 ORTHO05D009002 8.0e-11 71.2 65 49.2
SMO259G0048 Selaginella moellendorffii HOM05D007254 ORTHO05D009002 1.0e-10 70.9 72 44.4
Sc09g0007400 Simmondsia chinensis HOM05D007254 ORTHO05D009002 1.0e-10 70.9 65 52.3
Ca_12841_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 5.2e-10 68.6 71 53.5
Ca_12843_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 5.2e-10 68.6 71 53.5
Mapoly0026s0119 Marchantia polymorpha HOM05D007254 ORTHO05D009002 1.2e-09 67.4 64 50.0
CBR_g3936 Chara braunii HOM05D007254 ORTHO05D009002 2.6e-09 66.2 62 50.0
Psat6g034520 Pisum sativum HOM05D007254 ORTHO05D009002 3.4e-09 65.9 70 50.0
CDE06G0391 Ceratophyllum demersum HOM05D007254 ORTHO05D009002 4.4e-09 65.5 48 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1205 Anthoceros agrestis HOM05D007254 ORTHO05D009002 5.7e-09 65.1 130 29.2
MSTRG.25770 Avicennia marina HOM05D007254 ORTHO05D009002 7.5e-09 64.7 70 45.7
CBR_g69680 Chara braunii HOM05D007254 ORTHO05D009002 2.2e-08 63.2 64 42.2
AUR62038737 Chenopodium quinoa HOM05D007254 ORTHO05D009002 2.2e-08 63.2 61 52.5
unitig_32.g10941 Utricularia gibba HOM05D007254 ORTHO05D009002 2.2e-08 63.2 66 42.4
Migut.A00450 Erythranthe guttata HOM05D007254 ORTHO05D009002 2.8e-08 62.8 70 44.3
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 2.8e-08 62.8 65 52.3
Oeu008784.1 Olea europaea HOM05D007254 ORTHO05D009002 6.3e-08 61.6 63 46.0
CBR_g12499 Chara braunii HOM05D003699 ORTHO05D009002 1.4e-07 60.5 62 46.8
Lalb_Chr22g0361141 Lupinus albus HOM05D007254 ORTHO05D009002 1.8e-07 60.1 71 40.8
Medtr1g009180 Medicago truncatula HOM05D007254 ORTHO05D009002 3.1e-07 59.3 74 45.9
CBR_g12500 Chara braunii HOM05D003699 ORTHO05D009002 4.1e-07 58.9 62 45.2
ATR0626G074 Amborella trichopoda HOM05D007254 ORTHO05D009002 7.0e-07 58.2 72 41.7
SEGI_23529 Sequoiadendron giganteum HOM05D007254 ORTHO05D009002 7.7e-06 54.7 66 45.5


User provided reference genes

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