Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p37150 Brassica napus HOM05D002933 ORTHO05D007742 1.9e-133 479.2 244 100.0
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 6.0e-103 377.9 208 94.2
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.5e-101 373.2 205 94.1
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.5e-101 373.2 205 93.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 7.4e-101 370.9 205 93.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.1e-99 367.1 205 91.7
Sp5g07140 Schrenkiella parvula HOM05D002933 ORTHO05D007742 1.5e-93 346.7 209 87.1
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.3e-89 333.6 206 83.0
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 6.5e-89 331.3 208 82.2
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 6.5e-89 331.3 209 83.3
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 3.0e-86 322.4 206 81.1
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 7.4e-85 317.8 207 80.2
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 5.0e-81 305.1 208 76.0
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 1.3e-73 280.4 207 68.6
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 1.1e-67 260.8 216 62.5
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 3.2e-64 249.2 213 60.6
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 3.6e-63 245.7 207 61.8
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 1.8e-62 243.4 205 61.0
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 1.8e-62 243.4 205 61.0
Manes.07G111100 Manihot esculenta HOM05D002933 ORTHO05D007742 1.1e-61 240.7 212 59.9
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 5.7e-61 238.4 212 61.8
Sabra10G0162500 Salix brachista HOM05D002933 ORTHO05D007742 5.7e-61 238.4 212 59.0
PGR142G2901 Punica granatum HOM05D002933 ORTHO05D007742 3.7e-60 235.7 213 61.5
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 6.3e-60 235.0 180 62.8
CiPaw.02G180700 Carya illinoinensis HOM05D002933 ORTHO05D007742 1.4e-59 233.8 209 56.9
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.4e-59 233.8 183 63.9
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 2.4e-59 233.0 181 63.5
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 2.4e-59 233.0 183 63.4
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 4.1e-59 232.3 213 59.2
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 4.1e-59 232.3 164 66.5
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 5.3e-59 231.9 179 65.4
CANSAT56G0382 Cannabis sativa HOM05D002933 ORTHO05D007742 9.1e-59 231.1 212 58.0
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 9.1e-59 231.1 178 62.4
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 1.2e-58 230.7 180 65.6
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 1.6e-58 230.3 178 63.5
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 2.6e-58 229.6 184 63.0
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 3.5e-58 229.2 212 59.4
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 4.5e-58 228.8 180 64.4
Gohir.A05G300500 Gossypium hirsutum HOM05D002933 ORTHO05D007742 4.5e-58 228.8 184 61.4
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 5.9e-58 228.4 183 63.9
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.0e-57 227.6 183 61.2
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 1.0e-57 227.6 179 61.5
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 1.7e-57 226.9 212 56.1
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 1.7e-57 226.9 213 57.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 1.7e-57 226.9 215 55.8
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.2e-57 226.5 185 64.3
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 2.9e-57 226.1 149 69.1
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 2.9e-57 226.1 178 62.4
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 5.0e-57 225.3 212 59.0
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 1.1e-56 224.2 178 61.2
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.5e-56 223.8 213 59.2
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.9e-56 223.4 184 60.9
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.9e-56 223.4 184 60.9
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 1.9e-56 223.4 183 60.7
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.5e-56 223.0 213 58.7
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 3.2e-56 222.6 184 59.8
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 5.5e-56 221.9 180 60.6
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 7.2e-56 221.5 199 58.3
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 7.2e-56 221.5 187 62.6
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 7.2e-56 221.5 152 67.1
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 7.2e-56 221.5 179 59.8
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 7.2e-56 221.5 180 60.0
TWI38G1573 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 7.2e-56 221.5 216 52.3
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 9.4e-56 221.1 178 59.0
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-56 221.1 213 58.7
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 1.2e-55 220.7 213 57.3
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 1.2e-55 220.7 180 60.0
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.2e-55 220.7 213 57.3
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 1.2e-55 220.7 212 59.0
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.2e-55 220.7 179 59.2
MD01G1121300 Malus domestica HOM05D002933 ORTHO05D007742 2.1e-55 219.9 213 56.8
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 3.6e-55 219.2 203 56.2
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 6.1e-55 218.4 213 56.8
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 1.0e-54 217.6 179 58.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.0e-54 217.6 215 55.3
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.4e-54 217.2 179 59.2
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 1.8e-54 216.9 211 53.6
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 1.8e-54 216.9 211 53.6
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.0e-54 216.1 213 56.3
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 3.0e-54 216.1 217 57.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 3.0e-54 216.1 179 57.5
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 8.8e-54 214.5 179 58.1
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 1.5e-53 213.8 179 58.1
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.0e-53 213.4 217 55.8
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.0e-53 213.4 179 57.0
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 2.6e-53 213.0 177 58.2
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 2.6e-53 213.0 225 54.7
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 3.3e-53 212.6 212 53.8
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.7e-52 210.3 229 53.3
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 2.2e-52 209.9 203 54.7
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 2.8e-52 209.5 213 53.5
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 3.7e-52 209.1 213 53.5
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 4.8e-52 208.8 186 59.1
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 1.1e-51 207.6 212 53.8
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 1.4e-51 207.2 151 64.2
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 7.0e-51 204.9 163 60.1
HPP92_027632 Vanilla planifolia HOM05D002933 ORTHO05D007742 2.0e-50 203.4 217 51.6
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 7.7e-50 201.4 154 63.6
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 7.7e-50 201.4 153 63.4
HPP92_016520 Vanilla planifolia HOM05D002933 ORTHO05D007742 1.3e-49 200.7 217 51.2
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.5e-49 198.0 155 63.2
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 3.2e-48 196.1 224 49.1
Zm00001eb001650 Zea mays HOM05D002933 ORTHO05D007742 1.4e-46 190.7 207 51.7
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 5.2e-46 188.7 142 61.3
Glyma.02G094900 Glycine max HOM05D002933 ORTHO05D007742 1.7e-44 183.7 142 62.7
SGA_v2.0_scaffold28G11736 Striga asiatica HOM05D002933 ORTHO05D007742 1.7e-44 183.7 157 58.6
MELO3C025475.2 Cucumis melo HOM05D002933 ORTHO05D007742 2.2e-44 183.3 147 64.6
Potri.008G050300 Populus trichocarpa HOM05D002933 ORTHO05D007742 8.6e-41 171.4 179 50.3
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 1.1e-40 171.0 212 46.2
SGA_v2.0_scaffold28G11731 Striga asiatica HOM05D002933 ORTHO05D007742 1.1e-40 171.0 164 50.6
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 8.9e-38 161.4 169 46.7
SMO367G0292 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 1.5e-37 160.6 130 56.9
SMO367G0293 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 1.5e-37 160.6 130 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2816 Anthoceros agrestis HOM05D002933 ORTHO05D007742 2.6e-37 159.8 153 52.3
C08p30490 Brassica napus HOM05D002933 ORTHO05D007742 5.7e-37 158.7 107 79.4
TAR636G1208 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.4e-35 153.3 182 48.4
Pp3c2_13270 Physcomitrium patens HOM05D002933 ORTHO05D007742 2.0e-34 150.2 183 42.1
vmacro16485 Vaccinium macrocarpon HOM05D002933 ORTHO05D007742 1.0e-33 147.9 125 58.4
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.3e-33 147.5 166 45.8
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 5.0e-33 145.6 102 69.6
Lsat_1_v5_gn_5_23660 Lactuca sativa HOM05D002933 ORTHO05D007742 3.3e-32 142.9 102 66.7
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 1.4e-30 137.5 138 50.7
MCO11G828 Micromonas commoda HOM05D002933 ORTHO05D007742 2.0e-29 133.7 167 39.5
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 1.3e-25 120.9 208 35.6
Hma1.2p1_0060F.1_g032920 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 4.3e-24 115.9 75 72.0
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 9.5e-24 114.8 202 33.7
Manes.10G034800 Manihot esculenta HOM05D002933 ORTHO05D009221 1.4e-22 110.9 162 37.0
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 1.8e-22 110.5 162 35.8
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 4.0e-22 109.4 163 34.4
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 4.0e-22 109.4 205 32.7
PRCOL_00000618 Prasinoderma coloniale HOM05D002933 ORTHO05D007742 6.8e-22 108.6 134 41.0
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 1.2e-21 107.8 158 32.9
Haze_17014 Corylus avellana HOM05D002933 ORTHO05D009221 1.2e-21 107.8 164 35.4
BcaB01g00114 Brassica carinata HOM05D002933 ORTHO05D007742 1.5e-21 107.5 53 96.2
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 1.5e-21 107.5 205 30.7
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.5e-21 107.5 169 33.7
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 2.0e-21 107.1 177 36.2
QL08p058687 Quercus lobata HOM05D002933 ORTHO05D009221 3.4e-21 106.3 164 35.4
Sed0025549 Sechium edule HOM05D002933 ORTHO05D009221 3.4e-21 106.3 158 36.1
MELO3C025467.2 Cucumis melo HOM05D002933 ORTHO05D009221 5.8e-21 105.5 177 36.2
Cfa001527 Carpinus fangiana HOM05D002933 ORTHO05D009221 9.8e-21 104.8 206 32.0
PSO339G0478 Papaver somniferum HOM05D002933 ORTHO05D009221 9.8e-21 104.8 152 33.6
Glyma.20G239700 Glycine max HOM05D002933 ORTHO05D009221 1.3e-20 104.4 158 33.5
Glyma.20G098500 Glycine max HOM05D002933 ORTHO05D009221 2.2e-20 103.6 158 33.5
DCAR_015210 Daucus carota HOM05D002933 ORTHO05D009221 3.7e-20 102.8 165 33.9
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 3.7e-20 102.8 163 31.9
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 3.7e-20 102.8 158 32.9
Glyma.10G290700 Glycine max HOM05D002933 ORTHO05D009221 4.9e-20 102.4 155 34.2
PSO206G0047 Papaver somniferum HOM05D002933 ORTHO05D009221 4.9e-20 102.4 152 32.9
VMungo0720G1641 Vigna mungo HOM05D002933 ORTHO05D009221 1.1e-19 101.3 210 31.0
Atru.chr12.545 Acer truncatum HOM05D002933 ORTHO05D009221 2.4e-19 100.1 164 32.3
Cc02_g08380 Coffea canephora HOM05D002933 ORTHO05D009221 4.1e-19 99.4 209 30.1
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 4.1e-19 99.4 154 34.4
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 5.4e-19 99.0 202 29.2
Hma1.2p1_0402F.1_g144930 Hydrangea macrophylla HOM05D002933 ORTHO05D009221 9.2e-19 98.2 156 34.0
Migut.F01519 Erythranthe guttata HOM05D002933 ORTHO05D009221 1.2e-18 97.8 169 32.0
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 2.1e-18 97.1 180 32.2
AUR62022518 Chenopodium quinoa HOM05D002933 ORTHO05D009221 2.7e-18 96.7 164 32.3
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 3.5e-18 96.3 116 39.7
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 3.5e-18 96.3 206 28.2
EL10Ac2g03451 Beta vulgaris HOM05D002933 ORTHO05D009221 6.0e-18 95.5 194 32.5
BcaB02g09116 Brassica carinata HOM05D002933 ORTHO05D009221 6.6e-17 92.0 156 32.7
SalBow6G6093 Salvia bowleyana HOM05D002933 ORTHO05D009221 6.6e-17 92.0 160 30.0
Thhalv10017187m.g Eutrema salsugineum HOM05D002933 ORTHO05D009221 1.5e-16 90.9 154 31.8
RcHm_v2.0_Chr1g0365771 Rosa chinensis HOM05D002933 ORTHO05D009221 1.9e-16 90.5 166 28.9
CARHR134340 Cardamine hirsuta HOM05D002933 ORTHO05D009221 2.5e-16 90.1 154 31.2
Sp4g21770 Schrenkiella parvula HOM05D002933 ORTHO05D009221 2.5e-16 90.1 156 32.1
AL4G36860 Arabidopsis lyrata HOM05D002933 ORTHO05D009221 4.3e-16 89.4 154 31.2
BolC4t22428H Brassica oleracea HOM05D002933 ORTHO05D009221 7.3e-16 88.6 126 34.9
A05p06910 Brassica napus HOM05D002933 ORTHO05D009221 9.5e-16 88.2 128 34.4
Carub.0004s2154 Capsella rubella HOM05D002933 ORTHO05D009221 9.5e-16 88.2 153 31.4
C04p08180 Brassica napus HOM05D002933 ORTHO05D009221 2.1e-15 87.0 128 34.4
BraA05t19656Z Brassica rapa HOM05D002933 ORTHO05D009221 2.1e-15 87.0 156 31.4
Os10g0461400 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.1e-14 84.7 60 65.0
A09p48210 Brassica napus HOM05D002933 ORTHO05D007742 3.4e-13 79.7 42 81.0
ClCG09G020180 Citrullus lanatus HOM05D002933 ORTHO05D009221 1.7e-12 77.4 97 38.1
Ah.16g107480 Amaranthus hybridus HOM05D002933 ORTHO05D009221 2.9e-12 76.6 163 28.2
AUR62035952 Chenopodium quinoa HOM05D002933 ORTHO05D009221 7.1e-11 72.0 165 29.7
BcaC02g12077 Brassica carinata HOM05D002933 ORTHO05D009221 1.2e-10 71.2 120 34.2
A09p48220 Brassica napus HOM05D002933 ORTHO05D101959 1.0e-09 68.2 41 80.5
Psat6g236720 Pisum sativum HOM05D002933 ORTHO05D009221 1.2e-07 61.2 151 27.8


User provided reference genes

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