Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 1.8e-151 539.3 281 100.0
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 1.8e-151 539.3 281 100.0
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 1.8e-151 539.3 281 100.0
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 1.1e-143 513.5 285 95.1
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 1.4e-143 513.1 279 96.8
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 1.4e-143 513.1 279 96.8
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 3.5e-139 498.4 286 93.4
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 5.1e-138 494.6 286 92.0
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 6.6e-138 494.2 286 92.3
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 6.6e-138 494.2 285 92.3
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 3.3e-137 491.9 285 91.9
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 4.0e-135 485.0 281 92.2
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 6.9e-135 484.2 279 92.5
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 1.7e-133 479.6 287 89.5
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 4.2e-132 474.9 283 89.4
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 2.7e-131 472.2 281 89.0
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 1.8e-127 459.5 284 86.6
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 4.0e-119 431.8 298 77.2
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 3.5e-115 418.7 285 77.5
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.7e-109 399.8 284 79.6
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 1.5e-97 360.1 265 68.7
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 8.2e-96 354.4 273 67.0
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 5.3e-95 351.7 276 66.3
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 2.6e-94 349.4 235 75.3
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 3.4e-94 349.0 269 65.1
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.3e-93 347.1 280 64.3
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 1.3e-93 347.1 280 64.3
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 1.7e-93 346.7 272 65.8
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 2.9e-93 345.9 278 63.7
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 6.5e-93 344.7 286 62.9
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 6.5e-93 344.7 272 63.2
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 6.5e-93 344.7 262 69.5
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 8.5e-93 344.4 271 64.9
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 1.9e-92 343.2 280 63.6
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 4.2e-92 342.0 295 60.3
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 7.2e-92 341.3 294 60.5
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 9.4e-92 340.9 264 64.4
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 9.4e-92 340.9 250 67.2
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.1e-91 339.7 275 64.0
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 2.7e-91 339.3 276 63.8
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 6.1e-91 338.2 275 64.0
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 7.9e-91 337.8 275 64.0
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 1.4e-90 337.0 234 70.9
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 1.4e-90 337.0 234 70.9
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 1.4e-90 337.0 275 64.0
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 1.8e-90 336.7 250 67.6
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 2.3e-90 336.3 270 62.2
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 2.3e-90 336.3 285 61.1
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 3.9e-90 335.5 264 64.4
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 3.9e-90 335.5 277 61.4
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.1e-89 334.0 273 63.0
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 2.0e-89 333.2 294 59.9
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.0e-89 333.2 261 64.8
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 2.6e-89 332.8 228 71.5
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 3.3e-89 332.4 275 62.9
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 5.7e-89 331.6 244 66.4
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 5.7e-89 331.6 289 61.9
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.3e-88 330.5 288 59.7
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 1.7e-88 330.1 234 70.9
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 2.2e-88 329.7 292 58.9
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 2.2e-88 329.7 265 64.9
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 3.7e-88 328.9 234 67.5
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 4.8e-88 328.6 263 64.6
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 4.8e-88 328.6 289 61.2
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 6.3e-88 328.2 274 62.8
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 8.2e-88 327.8 283 61.5
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 1.1e-87 327.4 234 68.8
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 1.8e-87 326.6 286 60.5
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 4.1e-87 325.5 228 70.2
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 9.1e-87 324.3 258 60.9
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 1.6e-86 323.6 251 65.7
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 3.5e-86 322.4 276 60.9
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 3.5e-86 322.4 309 57.3
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 3.5e-86 322.4 289 59.5
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 4.5e-86 322.0 231 68.8
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 4.5e-86 322.0 231 68.8
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 1.3e-85 320.5 232 68.1
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.3e-85 320.5 234 66.7
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 2.2e-85 319.7 266 62.0
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 3.2e-84 315.8 233 65.7
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 3.2e-84 315.8 233 64.8
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 4.7e-83 312.0 233 64.4
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 8.0e-83 311.2 233 65.7
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 1.0e-82 310.8 230 66.1
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 4.0e-82 308.9 233 66.5
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 8.8e-82 307.8 233 63.9
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 2.0e-81 306.6 275 58.5
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 5.7e-81 305.1 220 70.0
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 7.5e-81 304.7 233 64.4
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 1.3e-80 303.9 275 57.8
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 6.3e-80 301.6 228 65.8
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 7.0e-79 298.1 240 62.5
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 1.0e-77 294.3 237 62.0
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 1.7e-77 293.5 177 87.6
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 1.6e-75 287.0 228 62.3
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 5.2e-74 282.0 218 62.8
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 4.4e-73 278.9 298 51.0
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 5.7e-73 278.5 197 77.2
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 2.2e-72 276.6 265 55.8
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 4.8e-72 275.4 258 56.2
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 2.6e-65 253.1 252 54.8
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 2.2e-64 250.0 229 56.3
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 1.0e-58 231.1 176 68.8
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 1.8e-58 230.3 279 50.2
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 4.9e-56 222.2 285 47.7
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 3.5e-46 189.5 208 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 1.9e-44 183.7 207 44.0
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 4.3e-44 182.6 139 72.7
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.3e-44 182.6 205 51.2
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 1.6e-43 180.6 141 59.6
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 8.1e-43 178.3 247 40.5
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 7.5e-41 171.8 198 46.0
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 3.2e-39 166.4 168 53.0
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 3.3e-36 156.4 207 43.5
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 1.7e-32 144.1 148 54.7
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 2.9e-32 143.3 87 73.6
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 1.5e-28 131.0 91 70.3
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 2.9e-24 116.7 98 63.3
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 3.0e-21 106.7 84 66.7
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 1.3e-16 91.3 59 71.2
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 7.4e-12 75.5 51 64.7
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 1.1e-10 71.6 192 26.0
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 9.0e-10 68.6 80 50.0
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 4.2e-07 59.7 34 79.4


User provided reference genes

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