Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-115 418.7 222 100.0
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-115 418.7 222 100.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.8e-115 418.7 222 100.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.4e-111 406.4 222 96.4
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-110 402.1 222 95.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 7.9e-102 374.0 220 92.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-101 372.1 220 91.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.1e-101 371.3 220 91.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.1e-101 371.3 220 91.8
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 6.7e-101 370.9 220 91.4
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.5e-100 369.0 220 90.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-99 366.7 220 90.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.1e-98 363.6 220 89.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-98 362.5 221 88.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 5.9e-97 357.8 220 88.6
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.9e-95 352.8 220 87.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.0e-93 345.5 200 89.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.5e-87 325.9 214 84.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-85 320.1 183 95.1
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-80 302.8 227 74.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.6e-78 296.6 210 79.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.7e-75 285.4 180 87.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.9e-73 278.1 230 67.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.9e-73 278.1 230 65.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.3e-72 276.9 231 66.2
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-72 276.2 228 68.9
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.9e-72 275.8 206 69.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.8e-72 275.4 207 71.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.8e-72 275.4 210 69.5
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.8e-72 275.4 230 67.0
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.0e-72 275.0 230 65.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-71 273.5 225 68.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.9e-71 273.1 232 64.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.9e-71 273.1 229 65.9
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 7.2e-71 271.2 212 69.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.6e-70 270.0 209 67.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.1e-70 269.6 210 67.6
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.1e-70 269.6 210 67.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.6e-70 268.9 207 67.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.6e-70 268.9 210 67.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.1e-70 268.1 230 64.8
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.1e-70 268.1 231 63.2
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-69 266.9 207 67.6
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.4e-69 266.9 207 67.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-69 266.9 208 67.3
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.8e-69 266.5 211 67.3
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.8e-69 266.5 209 66.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.3e-69 266.2 220 65.5
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.3e-69 266.2 214 66.8
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.0e-69 265.8 223 66.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.0e-69 265.8 237 60.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.0e-69 265.4 209 67.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-69 265.0 211 67.3
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-69 265.0 211 67.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 5.2e-69 265.0 199 70.4
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 6.8e-69 264.6 209 67.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.8e-69 264.6 211 67.3
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.8e-69 264.6 211 67.3
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 6.8e-69 264.6 227 63.0
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 8.8e-69 264.2 211 66.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.8e-69 264.2 208 66.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.8e-69 264.2 208 66.8
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-68 263.8 211 66.8
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.2e-68 263.8 213 66.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.2e-68 263.8 210 66.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.5e-68 263.5 208 66.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.5e-68 263.5 210 66.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.0e-68 263.1 216 65.7
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.0e-68 263.1 216 65.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.0e-68 263.1 211 66.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-68 263.1 211 66.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.0e-68 263.1 214 65.0
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.0e-68 263.1 208 66.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.0e-68 263.1 202 68.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.6e-68 262.7 212 65.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 3.4e-68 262.3 203 66.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 5.7e-68 261.5 208 66.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 5.7e-68 261.5 198 70.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 7.5e-68 261.2 209 66.0
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 9.8e-68 260.8 206 67.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 9.8e-68 260.8 194 70.1
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.3e-67 260.4 211 65.9
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.2e-67 259.6 204 68.6
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.2e-67 259.6 207 66.7
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.8e-67 259.2 229 60.3
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.7e-67 258.8 233 64.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 4.8e-67 258.5 198 70.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.3e-67 258.1 214 63.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 8.3e-67 257.7 239 61.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 8.3e-67 257.7 204 68.1
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.1e-66 257.3 207 66.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.4e-66 256.9 215 64.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.4e-66 256.9 213 63.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.8e-66 256.5 204 66.7
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.4e-66 256.1 203 66.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 3.1e-66 255.8 211 64.0
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.1e-66 255.4 203 66.5
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.1e-66 255.4 210 65.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.0e-66 254.6 230 61.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 9.1e-66 254.2 202 66.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 9.1e-66 254.2 207 64.7
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.6e-65 253.4 212 63.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.0e-65 253.1 197 66.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.5e-65 252.3 222 62.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 4.5e-65 251.9 211 64.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.5e-65 251.9 209 62.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.0e-64 250.8 236 61.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 8.5e-64 247.7 225 60.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.5e-63 246.1 194 64.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.2e-63 245.4 225 59.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 5.5e-63 245.0 219 63.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 5.5e-63 245.0 199 65.3
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.2e-63 244.6 210 61.4
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 9.5e-63 244.2 196 65.3
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-62 243.8 219 63.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.6e-62 243.4 199 66.3
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.4e-61 240.4 227 57.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 6.8e-61 238.0 200 61.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.8e-59 232.6 194 59.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 8.3e-59 231.1 203 59.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-58 230.7 194 59.8
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-58 229.2 205 62.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-57 227.3 205 62.4
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.6e-55 218.4 193 61.7
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.0e-54 214.5 198 58.1
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 8.3e-51 204.5 204 52.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.1e-50 204.1 148 69.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 5.6e-47 191.8 173 56.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.6e-46 189.1 232 52.6
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.4e-45 187.2 216 54.2
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.9e-39 166.8 125 67.2
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.1e-38 163.3 126 65.1
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.7e-35 152.5 114 66.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.2e-34 149.4 140 60.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.1e-34 149.1 218 44.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 7.1e-34 148.3 125 64.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.2e-33 147.5 102 71.6
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 6.6e-32 141.7 107 66.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.1e-13 81.3 90 55.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.7e-11 73.9 62 59.7


User provided reference genes

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