Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p36220 Brassica napus HOM05D001084 ORTHO05D012462 1.1e-148 530.0 277 100.0
BcaC02g09806 Brassica carinata HOM05D001084 ORTHO05D012462 8.5e-138 493.8 261 100.0
BcaC02g09821 Brassica carinata HOM05D001084 ORTHO05D012462 8.5e-138 493.8 261 100.0
C04p36380 Brassica napus HOM05D001084 ORTHO05D012462 8.5e-138 493.8 261 100.0
BolC4t25177H Brassica oleracea HOM05D001084 ORTHO05D012462 8.5e-138 493.8 261 100.0
BraA04t16121Z Brassica rapa HOM05D001084 ORTHO05D012462 2.5e-121 439.1 261 91.2
A04p04010 Brassica napus HOM05D001084 ORTHO05D012462 3.7e-117 425.2 261 90.0
BolC4t25157H Brassica oleracea HOM05D001084 ORTHO05D012462 6.8e-111 404.4 210 100.0
Sp5g06200 Schrenkiella parvula HOM05D001084 ORTHO05D012462 1.6e-96 356.7 267 73.0
A03p32900 Brassica napus HOM05D001084 ORTHO05D012462 2.4e-87 326.2 261 71.6
BraA03t12459Z Brassica rapa HOM05D001084 ORTHO05D012462 2.4e-87 326.2 261 71.6
C03p40030 Brassica napus HOM05D001084 ORTHO05D012462 4.0e-87 325.5 261 72.0
BcaC01g04450 Brassica carinata HOM05D001084 ORTHO05D012462 1.2e-86 323.9 261 71.6
BolC3t16268H Brassica oleracea HOM05D001084 ORTHO05D012462 1.2e-86 323.9 261 71.6
Thhalv10027573m.g Eutrema salsugineum HOM05D001084 ORTHO05D012462 2.2e-77 293.1 265 61.9
BcaC01g04547 Brassica carinata HOM05D001084 ORTHO05D012462 2.5e-73 279.6 260 63.1
AL5G38590 Arabidopsis lyrata HOM05D001084 ORTHO05D012462 9.6e-73 277.7 254 61.4
AT3G57100 Arabidopsis thaliana HOM05D001084 ORTHO05D012462 6.9e-71 271.6 266 57.9
Carub.0002s0368 Capsella rubella HOM05D001084 ORTHO05D012462 2.2e-48 196.8 241 48.5
THA.LOC104809771 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 1.5e-25 120.9 239 36.8
THA.LOC104809898 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 3.4e-25 119.8 266 34.2
THA.LOC104809885 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 7.5e-25 118.6 266 34.6
BcaC02g09825 Brassica carinata HOM05D001084 ORTHO05D032909 1.1e-23 114.8 92 71.7
C04p36150 Brassica napus HOM05D001084 ORTHO05D032909 1.1e-23 114.8 92 71.7
Thhalv10001140m.g Eutrema salsugineum HOM05D001084 ORTHO05D012462 1.1e-23 114.8 178 44.9
BolC4t25184H Brassica oleracea HOM05D001084 ORTHO05D032909 1.4e-23 114.4 92 71.7
THA.LOC104800220 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 1.2e-22 111.3 264 33.0
THA.LOC104810142 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 1.9e-20 104.0 270 33.7
THA.LOC104808428 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 2.1e-19 100.5 250 32.8
THA.LOC104810156 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 2.1e-19 100.5 224 34.4
THA.LOC104810155 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 3.6e-19 99.8 218 34.4
BcaB06g26055 Brassica carinata HOM05D001084 ORTHO05D012462 2.6e-17 93.6 97 59.8
THA.LOC109116534 Tarenaya hassleriana HOM05D001084 ORTHO05D018138 4.1e-15 86.3 181 36.5
Manes.13G136100 Manihot esculenta HOM05D001084 ORTHO05D001275 1.5e-12 77.8 235 26.0
vmacro02187 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 5.6e-12 75.9 235 29.8
vmacro02142 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 1.2e-11 74.7 236 30.5
MD15G1269200 Malus domestica HOM05D001084 ORTHO05D001275 1.6e-11 74.3 234 25.2
Atru.chr3.511 Acer truncatum HOM05D001084 ORTHO05D001275 3.6e-11 73.2 238 25.6
Lalb_Chr09g0322661 Lupinus albus HOM05D001084 ORTHO05D001275 3.6e-11 73.2 234 26.1
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 4.7e-11 72.8 233 25.8
AUR62011358 Chenopodium quinoa HOM05D001084 ORTHO05D001275 6.1e-11 72.4 233 24.5
AUR62016703 Chenopodium quinoa HOM05D001084 ORTHO05D001275 8.0e-11 72.0 233 24.5
ClCG09G017820 Citrullus lanatus HOM05D001084 ORTHO05D001275 8.0e-11 72.0 233 27.0
Carub.0007s0603 Capsella rubella HOM05D001084 ORTHO05D001275 1.4e-10 71.2 241 27.8
TWI53G1697 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 1.4e-10 71.2 238 24.4
Rhsim11G0173400 Rhododendron simsii HOM05D001084 ORTHO05D001275 1.8e-10 70.9 262 27.1
CSS0014022 Camellia sinensis var. sinensis HOM05D001084 ORTHO05D001275 2.3e-10 70.5 241 25.3
Cpa.g.sc158.19 Carica papaya HOM05D001084 ORTHO05D001275 2.3e-10 70.5 214 23.8
Sabra07G0027100 Salix brachista HOM05D001084 ORTHO05D001275 2.3e-10 70.5 239 26.8
EL10Ac9g21760 Beta vulgaris HOM05D001084 ORTHO05D001275 4.0e-10 69.7 234 25.2
Duzib187G0021 Durio zibethinus HOM05D001084 ORTHO05D001275 4.0e-10 69.7 233 24.5
Nitab4.5_0002622g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 4.0e-10 69.7 232 29.7
Eucgr.I02475 Eucalyptus grandis HOM05D001084 ORTHO05D001275 6.8e-10 68.9 233 26.2
Glyma.02G059100 Glycine max HOM05D001084 ORTHO05D001275 6.8e-10 68.9 234 24.8
Glyma.16G141800 Glycine max HOM05D001084 ORTHO05D001275 6.8e-10 68.9 233 24.5
Aa31LG8G15440 Aethionema arabicum HOM05D001084 ORTHO05D001275 8.9e-10 68.6 233 26.2
Gorai.003G016900 Gossypium raimondii HOM05D001084 ORTHO05D001275 8.9e-10 68.6 240 24.6
PGSC0003DMG400037697 Solanum tuberosum HOM05D001084 ORTHO05D001275 8.9e-10 68.6 257 28.8
Prupe.7G148500 Prunus persica HOM05D001084 ORTHO05D001275 1.2e-09 68.2 262 24.0
Psat2g162280 Pisum sativum HOM05D001084 ORTHO05D001275 1.5e-09 67.8 235 24.7
Glyma.11G063800 Glycine max HOM05D001084 ORTHO05D001275 2.0e-09 67.4 235 25.5
Ciclev10030403m.g Citrus clementina HOM05D001084 ORTHO05D001275 2.6e-09 67.0 241 24.1
Potri.007G031200 Populus trichocarpa HOM05D001084 ORTHO05D001275 2.6e-09 67.0 226 25.7
Gohir.A12G066100 Gossypium hirsutum HOM05D001084 ORTHO05D001275 3.4e-09 66.6 240 23.3
Gorai.008G069800 Gossypium raimondii HOM05D001084 ORTHO05D001275 3.4e-09 66.6 240 24.2
CAN.G914.2 Capsicum annuum HOM05D001084 ORTHO05D001275 4.4e-09 66.2 258 27.9
Ca_24831_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 4.4e-09 66.2 235 24.3
QL11p042349 Quercus lobata HOM05D001084 ORTHO05D001275 4.4e-09 66.2 233 24.0
RcHm_v2.0_Chr2g0102731 Rosa chinensis HOM05D001084 ORTHO05D001275 4.4e-09 66.2 262 23.7
Thecc.01G041800 Theobroma cacao HOM05D001084 ORTHO05D001275 4.4e-09 66.2 233 26.2
CANSAT25G0801 Cannabis sativa HOM05D001084 ORTHO05D001275 7.5e-09 65.5 234 25.6
FAN28G2585 Fragaria x ananassa HOM05D001084 ORTHO05D001275 7.5e-09 65.5 262 24.4
Glyma.01G178400 Glycine max HOM05D001084 ORTHO05D001275 7.5e-09 65.5 235 24.7
DCAR_022099 Daucus carota HOM05D001084 ORTHO05D001275 9.8e-09 65.1 235 26.0
Gohir.D12G066500 Gossypium hirsutum HOM05D001084 ORTHO05D001275 9.8e-09 65.1 233 25.3
Phvul.002G026300 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 9.8e-09 65.1 234 25.2
RcHm_v2.0_Chr6g0262961 Rosa chinensis HOM05D001084 ORTHO05D001275 9.8e-09 65.1 241 24.5
Medtr5g019430 Medicago truncatula HOM05D001084 ORTHO05D001275 1.3e-08 64.7 234 24.4
THA.LOC104807331 Tarenaya hassleriana HOM05D001084 ORTHO05D001275 1.3e-08 64.7 241 24.5
TWI75G0560 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 1.3e-08 64.7 240 24.6
FvH4_1g14080 Fragaria vesca HOM05D001084 ORTHO05D001275 1.7e-08 64.3 262 23.3
FAN26G2905 Fragaria x ananassa HOM05D001084 ORTHO05D001275 1.7e-08 64.3 262 23.3
Sed0014401 Sechium edule HOM05D001084 ORTHO05D001275 1.7e-08 64.3 244 26.6
vmacro02140 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 1.7e-08 64.3 234 27.4
BraA09t36844Z Brassica rapa HOM05D001084 ORTHO05D001275 2.2e-08 63.9 242 26.0
Lj4g0017599 Lotus japonicus HOM05D001084 ORTHO05D001275 2.2e-08 63.9 234 23.9
Lalb_Chr05g0213001 Lupinus albus HOM05D001084 ORTHO05D001275 2.2e-08 63.9 235 25.5
TWI09G0356 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 2.9e-08 63.5 238 23.5
BcaC04g22894 Brassica carinata HOM05D001084 ORTHO05D001275 3.7e-08 63.2 241 26.1
C09p14140 Brassica napus HOM05D001084 ORTHO05D001275 3.7e-08 63.2 241 26.1
BolC9t54311H Brassica oleracea HOM05D001084 ORTHO05D001275 3.7e-08 63.2 241 26.1
FAN23G1338 Fragaria x ananassa HOM05D001084 ORTHO05D001275 4.9e-08 62.8 262 23.3
Gohir.A02G163500 Gossypium hirsutum HOM05D001084 ORTHO05D001275 4.9e-08 62.8 240 24.2
VMungo1215G2091 Vigna mungo HOM05D001084 ORTHO05D001275 4.9e-08 62.8 243 25.5
A09p12010 Brassica napus HOM05D001084 ORTHO05D001275 6.4e-08 62.4 248 25.8
CSS0030651 Camellia sinensis var. sinensis HOM05D001084 ORTHO05D001275 6.4e-08 62.4 216 25.5
DCAR_026266 Daucus carota HOM05D001084 ORTHO05D001275 6.4e-08 62.4 261 25.7
Eucgr.G00464 Eucalyptus grandis HOM05D001084 ORTHO05D001275 6.4e-08 62.4 242 27.7
FAN19G0364 Fragaria x ananassa HOM05D001084 ORTHO05D001275 6.4e-08 62.4 262 22.9
Eucgr.L03059 Eucalyptus grandis HOM05D001084 ORTHO05D001275 8.3e-08 62.0 242 28.1
Lj7C11T1 Lonicera japonica HOM05D001084 ORTHO05D001275 8.3e-08 62.0 234 25.2
AT5G66675 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 1.1e-07 61.6 238 23.1
TPR.G23217 Trifolium pratense HOM05D001084 ORTHO05D001275 1.1e-07 61.6 234 23.9
MELO3C012570.2 Cucumis melo HOM05D001084 ORTHO05D001275 1.4e-07 61.2 234 26.5
Eucgr.G01902 Eucalyptus grandis HOM05D001084 ORTHO05D001275 1.4e-07 61.2 242 27.3
Medtr8g078100 Medicago truncatula HOM05D001084 ORTHO05D001275 1.4e-07 61.2 234 25.6
Psat4g091120 Pisum sativum HOM05D001084 ORTHO05D001275 1.4e-07 61.2 234 25.6
PGR102G0101 Punica granatum HOM05D001084 ORTHO05D001275 1.4e-07 61.2 243 28.8
Rhsim08G0111500 Rhododendron simsii HOM05D001084 ORTHO05D001275 1.4e-07 61.2 234 23.5
TPR.G20277 Trifolium pratense HOM05D001084 ORTHO05D001275 1.4e-07 61.2 234 25.6
MSTRG.3391 Avicennia marina HOM05D001084 ORTHO05D001275 2.4e-07 60.5 232 24.1
Cfa004264 Carpinus fangiana HOM05D001084 ORTHO05D001275 2.4e-07 60.5 234 23.5
Eucgr.H04971 Eucalyptus grandis HOM05D001084 ORTHO05D001275 2.4e-07 60.5 242 28.1
Ciclev10025839m.g Citrus clementina HOM05D001084 ORTHO05D001275 4.1e-07 59.7 239 23.0
Cc07_g05110 Coffea canephora HOM05D001084 ORTHO05D001275 4.1e-07 59.7 219 23.3
CsaV3_7G023240 Cucumis sativus L. HOM05D001084 ORTHO05D001275 4.1e-07 59.7 234 25.2
Nitab4.5_0000107g0040 Nicotiana tabacum HOM05D001084 ORTHO05D001275 4.1e-07 59.7 216 28.7
Hma1.2p1_0652F.1_g195940 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 5.4e-07 59.3 235 24.7
Lj2g0009408 Lotus japonicus HOM05D001084 ORTHO05D001275 5.4e-07 59.3 240 23.8
ClCG02G005280 Citrullus lanatus HOM05D001084 ORTHO05D001275 7.0e-07 58.9 234 23.9
Haze_15137 Corylus avellana HOM05D001084 ORTHO05D001275 9.2e-07 58.5 234 22.6
unitig_62.g23400 Utricularia gibba HOM05D001084 ORTHO05D001275 1.2e-06 58.2 233 27.9
Nn5g29497 Nelumbo nucifera HOM05D001084 ORTHO05D001275 1.6e-06 57.8 195 25.6
Peaxi162Scf00078g00021 Petunia axillaris HOM05D001084 ORTHO05D001275 1.6e-06 57.8 232 28.4
vmacro02139 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 1.6e-06 57.8 245 24.5
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 3.5e-06 56.6 262 23.7
A09p09860 Brassica napus HOM05D001084 ORTHO05D001275 7.8e-06 55.5 242 22.3
BraA09t36633Z Brassica rapa HOM05D001084 ORTHO05D001275 7.8e-06 55.5 242 22.3


User provided reference genes

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