Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.9e-126 454.5 237 100.0
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.9e-126 454.5 237 100.0
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.9e-126 454.5 237 100.0
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 1.2e-116 423.3 237 93.2
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 3.5e-116 421.8 237 93.2
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-108 396.7 242 88.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.6e-87 325.9 255 77.3
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 5.0e-86 321.6 248 73.8
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 5.0e-86 321.6 248 73.8
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.6e-84 316.6 249 73.9
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.1e-84 316.2 249 72.7
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-84 316.2 249 72.7
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 7.9e-84 314.3 249 72.7
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 4.1e-80 302.0 256 70.3
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.0e-78 295.0 260 69.2
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.1e-77 293.9 251 70.1
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.5e-77 292.7 250 70.4
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.5e-74 283.5 258 66.7
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.2e-61 238.8 264 60.6
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 7.7e-55 218.0 248 55.2
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.3e-54 216.5 262 56.9
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.9e-53 213.4 253 56.1
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.8e-52 209.5 257 54.5
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.2e-50 204.1 252 55.2
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.4e-50 202.2 252 54.4
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-47 193.0 246 51.6
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 2.7e-47 193.0 245 51.0
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.5e-47 192.6 246 51.6
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.5e-47 192.6 246 51.6
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.9e-46 189.1 248 52.8
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 5.0e-46 188.7 247 54.3
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.8e-44 183.0 247 50.6
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 7.5e-42 174.9 247 49.4
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.7e-33 147.1 240 43.3
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.7e-33 147.1 240 43.8
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 4.9e-33 145.6 239 43.9
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.1e-31 140.2 264 40.9
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.7e-31 139.8 245 42.9
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.0e-30 137.9 249 42.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.7e-30 137.1 247 44.5
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.5e-29 134.0 244 42.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.5e-29 133.3 241 44.4
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.6e-28 130.6 239 43.1
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.1e-28 130.2 262 39.3
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.1e-28 130.2 260 40.4
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 4.7e-28 129.0 240 41.7
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 4.7e-28 129.0 252 41.3
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 8.1e-28 128.3 266 38.7
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.1e-27 127.9 252 42.1
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 5.2e-27 125.6 269 38.3
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 5.2e-27 125.6 241 42.3
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 5.2e-27 125.6 255 41.2
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.2e-26 124.4 259 40.9
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.5e-26 124.0 242 40.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.0e-26 123.6 253 40.3
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 2.0e-26 123.6 263 41.8
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.0e-26 123.6 241 40.2
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 3.4e-26 122.9 252 41.3
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 3.4e-26 122.9 246 39.4
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.7e-25 120.6 247 42.1
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.7e-25 120.6 263 41.4
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.2e-25 120.2 259 40.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.2e-25 120.2 264 39.4
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 6.4e-25 118.6 247 40.1
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 8.3e-25 118.2 242 40.1
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-24 117.9 242 37.2
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.1e-24 117.9 262 38.9
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 5.4e-24 115.5 242 37.6
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 5.4e-24 115.5 263 38.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 7.1e-24 115.2 261 36.4
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.6e-23 114.0 224 40.6
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.6e-23 114.0 249 39.4
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.7e-23 113.2 245 40.8
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.7e-23 113.2 251 38.2
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.5e-23 112.8 249 39.0
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.3e-22 110.9 231 42.0
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.7e-22 110.5 257 40.1
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.7e-22 110.5 243 36.6
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.3e-22 110.2 240 37.1
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 3.9e-22 109.4 243 39.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 5.1e-22 109.0 248 39.1
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 6.6e-22 108.6 245 38.4
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.6e-22 108.6 243 36.6
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.1e-21 107.8 253 36.8
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.1e-21 107.8 248 37.5
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.5e-21 107.5 238 38.7
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.5e-21 106.7 240 40.8
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 3.3e-21 106.3 248 37.5
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 4.3e-21 105.9 246 39.8
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 7.3e-21 105.1 281 34.2
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 9.6e-21 104.8 249 39.8
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 9.6e-21 104.8 189 42.9
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.1e-20 103.6 245 38.8
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 8.1e-20 101.7 180 43.3
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.1e-19 101.3 235 37.9
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.8e-19 100.5 249 37.3
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 5.2e-19 99.0 236 36.9
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 6.8e-19 98.6 238 36.6
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 8.9e-19 98.2 245 38.8
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.2e-18 97.8 243 37.4
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-18 97.8 240 37.9
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-18 97.8 248 35.5
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.4e-18 96.3 238 37.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.8e-18 95.5 238 37.0
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 5.8e-18 95.5 239 36.8
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.9e-18 94.7 240 37.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 9.9e-18 94.7 240 37.9
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.3e-17 94.4 237 34.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.7e-17 94.0 239 38.1
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.7e-17 94.0 238 38.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.2e-17 93.6 235 36.2
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-17 92.8 234 35.9
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 4.9e-17 92.4 233 36.5
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.1e-16 91.3 254 34.6
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-16 90.9 238 36.1
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.4e-16 90.9 243 35.8
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.9e-16 90.5 260 33.1
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.9e-16 90.5 253 35.6
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-15 87.8 242 35.1
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.6e-15 87.4 235 34.9
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.5e-15 86.3 167 42.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.6e-15 85.9 252 33.3
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 6.0e-15 85.5 262 32.8
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 6.0e-15 85.5 247 34.8
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 7.8e-15 85.1 178 38.2
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 1.7e-14 84.0 249 32.5
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.0e-14 83.2 244 33.2
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 5.1e-14 82.4 239 34.7
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 6.6e-14 82.0 193 34.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-13 80.1 240 34.2
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.5e-13 80.1 148 43.2
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 2.5e-13 80.1 193 35.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 3.3e-13 79.7 139 42.4
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 4.3e-13 79.3 179 39.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 7.3e-13 78.6 149 38.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.3e-13 78.6 147 42.2
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.3e-12 77.8 137 43.1
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 6.2e-12 75.5 198 36.4
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.4e-11 74.3 249 30.9
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 4.0e-11 72.8 169 37.9
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 9.0e-11 71.6 145 40.7
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.0e-11 71.6 181 34.8
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.5e-10 70.9 229 33.6
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 4.9e-09 65.9 239 32.2
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-08 64.7 239 32.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.9e-08 63.9 252 30.2
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.3e-08 61.6 178 32.6
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 2.1e-07 60.5 86 48.8
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 6.0e-07 58.9 239 29.7
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 3.9e-06 56.2 227 30.8
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 8.7e-06 55.1 254 31.1


User provided reference genes

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