Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2533.1 1358 100.0
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2533.1 1358 100.0
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2530.7 1358 99.9
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2483.0 1353 97.9
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2474.5 1358 97.8
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2380.1 1363 93.2
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2369.7 1327 94.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2369.0 1395 91.3
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2369.0 1395 91.3
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 2332.8 1267 95.2
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 2320.0 1324 92.5
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 2312.3 1359 90.4
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 2281.9 1358 88.8
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2275.4 1442 86.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 2272.7 1323 90.0
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2243.4 1359 88.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 2137.8 1439 80.4
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 2073.1 1263 84.6
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 2008.4 1221 87.9
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1842.4 1360 71.0
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1821.2 1270 73.5
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1820.4 1365 71.4
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1817.4 1289 72.4
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1810.4 1350 69.9
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1806.2 1290 72.7
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1801.9 1295 72.0
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1799.3 1274 72.5
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1798.9 1266 73.1
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1797.7 1341 71.0
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1797.7 1341 70.8
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1795.4 1274 73.0
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1794.6 1373 70.3
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1790.4 1362 69.4
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1786.9 1386 67.9
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1782.7 1362 69.1
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1782.3 1358 70.8
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1781.9 1270 72.2
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1778.8 1274 71.8
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1774.6 1373 69.4
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1773.4 1279 71.9
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1773.1 1275 72.1
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1764.6 1274 71.6
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1757.3 1209 74.4
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1749.9 1270 71.6
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1748.0 1385 66.1
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1747.6 1288 69.8
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1747.3 1282 70.4
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1743.4 1277 71.7
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1742.6 1357 67.9
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1735.3 1281 69.6
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1732.2 1281 69.6
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1732.2 1262 70.3
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1728.4 1262 70.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1720.3 1276 69.7
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1720.3 1291 69.9
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1716.8 1274 70.0
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1713.4 1287 69.3
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1711.0 1285 69.3
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1710.3 1385 67.4
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1706.8 1370 66.6
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1704.1 1351 67.0
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1704.1 1250 70.1
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1703.3 1276 69.5
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1703.0 1352 67.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1693.3 1352 67.6
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1690.2 1273 69.4
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1689.1 1266 68.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1689.1 1291 68.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1686.8 1356 66.7
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1686.4 1266 68.5
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1682.9 1290 69.8
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1682.9 1258 68.6
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1679.1 1319 66.1
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1676.4 1281 68.9
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1676.0 1187 79.7
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1673.3 1345 66.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1672.1 1271 69.0
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1671.0 1260 67.9
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1667.1 1296 68.4
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1662.5 1351 65.3
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1658.3 1274 68.4
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1652.1 1273 68.0
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1637.5 1272 67.6
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1634.8 1381 64.8
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1611.3 1507 59.3
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1603.2 1289 66.3
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1599.7 1093 75.6
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1597.4 1280 67.1
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1591.6 1279 66.4
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1572.8 1269 64.8
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1567.7 1272 65.1
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1558.9 1280 64.5
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1517.3 1126 71.2
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1508.0 1364 59.4
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1488.8 1274 63.0
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1454.9 1118 67.6
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1451.4 1046 72.7
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1436.0 1091 68.4
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1427.9 1238 61.9
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1396.7 1307 56.4
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1338.2 1361 55.4
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1330.1 1076 66.4
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1165.6 830 72.2
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1124.8 1262 48.7
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 9.3e-312 1074.7 1331 45.0
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.6e-309 1066.6 1263 48.1
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.0e-300 1037.3 1235 47.2
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.1e-294 1017.3 1261 44.8
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.5e-283 980.3 721 69.6
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 3.7e-250 869.4 1250 41.6
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.7e-242 844.0 802 59.6
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-173 614.8 612 56.2
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 7.6e-171 605.9 1299 32.9
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 6.2e-165 586.3 1255 30.6
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 7.3e-158 562.8 535 59.6
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.7e-117 428.7 358 62.3
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 1.6e-107 395.6 350 62.9
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 7.7e-91 340.1 1114 25.2
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 3.4e-78 298.1 1098 24.0
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 2.2e-61 242.3 1100 24.5
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.5e-59 235.0 213 60.6
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.5e-59 235.0 213 60.6
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.9e-53 215.3 207 55.6
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-51 209.9 214 53.7
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 2.1e-51 209.1 238 51.3
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.9e-50 204.9 215 52.1
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 5.3e-47 194.5 222 44.1
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-46 192.6 177 58.2
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 7.6e-46 190.7 161 60.9
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 1.9e-44 186.0 181 58.0
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.0e-42 178.7 162 60.5
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-41 176.8 162 59.9
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.4e-36 159.1 137 65.0
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.6e-33 147.9 135 60.0
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 2.7e-27 129.0 128 54.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.7e-27 129.0 122 57.4
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.0e-27 127.9 142 55.6
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-24 119.8 106 56.6
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 2.9e-21 109.0 88 61.4
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.2e-20 105.1 98 60.2
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-19 103.6 71 71.8
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-19 103.6 96 61.5
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 2.1e-19 102.8 90 56.7
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.5e-19 102.1 61 78.7
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.5e-17 96.7 97 57.7
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.5e-17 95.9 77 62.3
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.5e-17 95.9 77 62.3
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.3e-16 93.6 108 49.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.7e-16 92.0 67 65.7
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.1e-15 89.0 64 68.8
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 4.1e-15 88.6 57 78.9
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.9e-15 87.8 68 63.2
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 2.0e-14 86.3 63 71.4
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 5.9e-14 84.7 97 49.5
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 1.4e-12 80.1 61 67.2
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 4.3e-09 68.6 64 56.2
BcaB02g08331 Brassica carinata HOM05D004602 ORTHO05D014120 6.9e-07 61.2 33 84.8
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 6.9e-07 61.2 160 26.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 9.1e-07 60.8 175 26.3
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 1.2e-06 60.5 81 49.4
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 1.5e-06 60.1 135 27.4
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 1.5e-06 60.1 135 27.4
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 2.6e-06 59.3 129 27.9
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 3.4e-06 58.9 154 26.6
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 4.5e-06 58.5 158 25.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 5.9e-06 58.2 155 26.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 7.7e-06 57.8 157 24.2
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 7.7e-06 57.8 135 25.9


User provided reference genes

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