Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-49 198.7 98 100.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.0e-49 198.7 98 100.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.0e-49 198.7 98 100.0
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-38 162.9 98 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-38 162.9 98 86.7
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.8e-35 151.0 98 82.7
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 9.1e-34 146.7 98 80.6
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 3.4e-33 144.8 98 79.6
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 3.4e-33 144.8 98 79.6
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 3.4e-33 144.8 98 79.6
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 5.0e-32 141.0 98 78.6
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.5e-31 138.7 98 78.6
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-30 136.0 98 75.5
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 2.1e-30 135.6 98 78.6
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-29 133.3 98 73.5
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 3.0e-29 131.7 98 75.5
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 6.7e-29 130.6 98 74.5
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.3e-27 126.3 98 71.4
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 3.7e-27 124.8 98 73.5
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 3.7e-27 124.8 98 73.5
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 6.3e-27 124.0 98 69.4
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 5.9e-25 117.5 99 67.7
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 8.5e-16 87.0 99 53.5
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.2e-14 83.2 100 47.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.6e-14 82.8 98 49.0
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.1e-14 82.4 98 49.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.7e-14 82.0 100 50.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.0e-13 80.1 96 49.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.4e-13 79.7 99 47.5
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.3e-13 79.0 98 49.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 5.2e-13 77.8 97 48.5
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.2e-13 77.8 72 52.8
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.8e-13 77.0 36 91.7
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.8e-13 77.0 36 91.7
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.8e-13 77.0 36 91.7
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.2e-12 76.6 41 78.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.2e-12 76.6 95 47.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-12 76.3 101 49.5
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.6e-12 75.5 41 78.0
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.6e-12 75.5 41 78.0
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 3.4e-12 75.1 37 86.5
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.4e-12 75.1 96 46.9
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 3.4e-12 75.1 44 75.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.4e-12 75.1 98 49.0
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.4e-12 74.7 62 62.9
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.4e-12 74.7 62 62.9
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.4e-12 74.7 39 82.1
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.7e-12 74.3 100 44.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 5.7e-12 74.3 99 45.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.5e-12 73.9 72 51.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 7.5e-12 73.9 36 80.6
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.5e-12 73.9 37 81.1
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 7.5e-12 73.9 37 81.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.8e-12 73.6 79 53.2
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 9.8e-12 73.6 36 86.1
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 9.8e-12 73.6 36 86.1
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 9.8e-12 73.6 36 86.1
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 9.8e-12 73.6 37 83.8
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.3e-11 73.2 35 85.7
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.3e-11 73.2 36 86.1
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.3e-11 73.2 37 81.1
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.7e-11 72.8 42 73.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.7e-11 72.8 50 64.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.7e-11 72.8 96 43.8
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 2.2e-11 72.4 100 43.0
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 2.2e-11 72.4 65 56.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-11 72.4 62 59.7
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.2e-11 72.4 98 46.9
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.8e-11 72.0 36 83.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.8e-11 72.0 32 96.9
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.7e-11 71.6 98 48.0
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.7e-11 71.6 36 80.6
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.7e-11 71.6 36 80.6
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 3.7e-11 71.6 34 88.2
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 8.3e-11 70.5 33 87.9
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 8.3e-11 70.5 66 54.5
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 8.3e-11 70.5 98 39.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.4e-10 69.7 98 43.9
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.8e-10 69.3 53 64.2
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.8e-10 69.3 53 60.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.4e-10 68.9 61 59.0
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-10 68.9 61 55.7
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.1e-10 68.6 34 82.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.1e-10 68.6 40 77.5
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.1e-10 68.6 34 79.4
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.1e-10 68.2 40 70.0
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 4.1e-10 68.2 107 40.2
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 4.1e-10 68.2 34 88.2
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.1e-10 68.2 34 79.4
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 5.4e-10 67.8 52 63.5
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.4e-10 67.8 46 63.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 7.0e-10 67.4 61 54.1
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 7.0e-10 67.4 59 59.3
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 7.0e-10 67.4 36 75.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 7.0e-10 67.4 50 60.0
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 7.0e-10 67.4 36 77.8
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.1e-10 67.0 33 84.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.2e-09 66.6 46 65.2
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.2e-09 66.6 47 66.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.2e-09 66.6 52 61.5
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.6e-09 66.2 34 79.4
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-09 66.2 36 72.2
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-09 66.2 36 72.2
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-09 66.2 36 72.2
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-09 66.2 36 72.2
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-09 66.2 33 84.8
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.6e-09 66.2 38 76.3
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.6e-09 66.2 32 87.5
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-09 66.2 98 38.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.6e-09 66.2 98 39.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.7e-09 65.5 32 84.4
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.5e-09 65.1 42 66.7
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.5e-09 65.1 38 68.4
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.5e-09 65.1 98 43.9
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 3.5e-09 65.1 75 52.0
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 4.5e-09 64.7 61 57.4
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.5e-09 64.7 31 87.1
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.5e-09 64.7 44 65.9
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.5e-09 64.7 33 81.8
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 5.9e-09 64.3 54 57.4
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.7e-09 63.9 97 38.1
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.0e-08 63.5 41 70.7
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.0e-08 63.5 100 46.0
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.0e-08 63.5 56 57.1
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.3e-08 63.2 44 65.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.7e-08 62.8 58 55.2
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.7e-08 62.8 30 86.7
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.7e-08 62.8 31 83.9
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.7e-08 62.8 34 76.5
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-08 62.4 100 44.0
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 2.2e-08 62.4 102 42.2
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 2.2e-08 62.4 97 39.2
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.9e-08 62.0 62 54.8
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.9e-08 62.0 30 86.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.9e-08 62.0 30 86.7
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.9e-08 62.0 59 54.2
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.9e-08 62.0 59 54.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.8e-08 61.6 32 78.1
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.8e-08 61.6 103 45.6
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 3.8e-08 61.6 38 65.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.0e-08 61.2 64 50.0
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.5e-08 60.8 30 80.0
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.5e-08 60.8 42 69.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 6.5e-08 60.8 29 89.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 8.5e-08 60.5 30 83.3
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.5e-08 60.5 38 68.4
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.5e-08 60.5 32 75.0
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 8.5e-08 60.5 42 66.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 8.5e-08 60.5 96 40.6
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.1e-07 60.1 35 71.4
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.1e-07 60.1 96 40.6
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.5e-07 59.7 30 83.3
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.5e-07 59.7 99 41.4
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.5e-07 59.7 29 86.2
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.9e-07 59.3 99 41.4
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.9e-07 59.3 30 80.0
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.2e-07 58.5 37 64.9
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 3.2e-07 58.5 37 64.9
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 5.5e-07 57.8 96 36.5
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 5.5e-07 57.8 30 80.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 5.5e-07 57.8 45 57.8
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 7.2e-07 57.4 83 42.2
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 7.2e-07 57.4 88 45.5
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 9.4e-07 57.0 37 62.2
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 9.4e-07 57.0 97 40.2
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.2e-06 56.6 62 50.0
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-06 56.6 92 41.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.2e-06 56.6 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.1e-06 55.8 78 43.6
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.6e-06 55.1 96 35.4
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 4.7e-06 54.7 98 33.7
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 4.7e-06 54.7 59 52.5
Potri.006G050800 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.1e-06 54.3 92 40.2
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.1e-06 54.3 35 71.4
Gohir.A09G122450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.0e-06 53.9 26 88.5
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 8.0e-06 53.9 54 48.1


User provided reference genes

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