Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-95 350.5 175 100.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-88 327.4 162 99.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.2e-82 308.1 182 88.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.5e-79 298.9 176 85.8
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-78 295.4 162 90.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 4.8e-78 294.7 173 86.1
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-77 292.7 178 83.7
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.4e-77 292.4 177 83.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.1e-77 291.6 178 84.3
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-77 291.2 178 84.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 9.1e-77 290.4 173 85.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 7.9e-73 277.3 162 83.3
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 8.2e-70 267.3 184 75.5
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-68 263.5 161 82.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-68 262.7 159 84.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.0e-67 258.1 165 81.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.1e-65 251.1 182 73.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-63 245.4 178 74.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.7e-62 241.9 189 70.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-60 235.7 190 69.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.1e-50 203.8 175 65.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.9e-43 179.1 204 54.4
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-38 163.7 182 56.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.2e-37 159.1 177 57.1
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 3.3e-34 149.1 187 47.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-33 147.1 189 48.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-33 146.7 180 53.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.6e-33 145.6 182 46.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-33 145.2 180 51.7
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.1e-32 142.5 177 46.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.1e-32 142.5 178 47.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-32 142.1 177 51.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.8e-32 141.4 177 51.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 8.9e-32 141.0 176 50.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-31 140.6 190 46.3
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-31 140.2 177 50.8
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.6e-31 139.4 194 47.4
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.4e-31 139.0 192 44.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.4e-31 139.0 191 46.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.4e-31 138.7 190 48.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 5.8e-31 138.3 190 45.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.5e-31 137.9 176 49.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.8e-31 137.5 186 46.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 9.8e-31 137.5 193 44.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-30 137.1 190 44.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.3e-30 137.1 186 45.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.7e-30 136.7 187 48.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.7e-30 136.7 184 47.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.2e-30 136.3 193 44.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 2.9e-30 136.0 181 47.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.9e-30 136.0 185 42.2
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.9e-30 136.0 190 48.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.9e-30 136.0 179 46.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.3e-30 134.4 175 50.9
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.1e-29 134.0 190 44.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.4e-29 133.7 190 44.2
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-29 133.7 171 46.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.4e-29 133.7 183 49.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.4e-29 133.7 187 42.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-29 133.7 189 46.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-29 133.3 177 46.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.4e-29 132.9 186 45.7
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.2e-29 132.5 165 47.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-29 131.3 185 47.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-28 130.6 185 47.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-28 130.6 187 43.9
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-28 130.2 187 43.9
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.0e-28 129.8 191 46.1
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.7e-28 129.4 185 47.6
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.5e-28 129.0 177 44.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-28 129.0 195 42.1
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-28 129.0 196 41.8
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.5e-28 129.0 196 41.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 4.6e-28 128.6 182 44.5
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.6e-28 128.6 186 42.5
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-27 127.5 182 45.6
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.3e-27 127.1 194 43.8
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.7e-27 126.7 196 41.3
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-27 126.7 189 41.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-27 126.7 177 45.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-27 125.9 182 44.5
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.0e-27 125.9 184 42.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 3.0e-27 125.9 183 42.6
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.0e-27 125.2 174 45.4
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.6e-27 124.8 201 41.8
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 8.6e-27 124.4 190 43.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-26 123.6 197 43.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-26 123.2 164 46.3
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.9e-26 123.2 198 40.9
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.9e-26 123.2 197 39.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.9e-26 123.2 190 42.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.9e-26 123.2 185 44.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.3e-26 122.5 178 44.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.3e-26 122.5 180 45.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.3e-26 122.5 173 46.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.3e-26 121.3 194 43.3
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 7.3e-26 121.3 182 42.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 9.5e-26 120.9 191 43.5
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.5e-26 120.9 194 43.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.5e-26 120.9 191 43.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.5e-26 120.9 191 43.5
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.5e-26 120.9 183 44.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-25 120.6 188 41.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.2e-25 120.6 195 43.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-25 120.2 209 40.7
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-25 120.2 199 41.7
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.1e-25 119.8 193 41.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.1e-25 119.8 120 54.2
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.6e-25 119.0 192 41.7
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 4.7e-25 118.6 203 40.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 4.7e-25 118.6 204 41.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.2e-25 118.2 187 41.7
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.2e-25 118.2 188 42.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.2e-25 118.2 204 40.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 8.1e-25 117.9 178 42.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.1e-24 117.5 184 41.8
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.8e-24 116.7 183 42.1
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.3e-24 116.3 182 41.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.1e-24 115.9 173 44.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.0e-24 115.5 183 44.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 6.8e-24 114.8 183 43.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-23 114.0 171 44.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-23 114.0 175 44.0
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.5e-23 113.6 180 44.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-23 113.6 170 43.5
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-23 113.6 170 43.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.0e-23 113.2 182 42.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.6e-23 112.8 193 43.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.6e-23 112.8 180 42.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.4e-23 112.5 213 38.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 4.4e-23 112.1 186 41.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.5e-23 111.3 154 44.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.8e-23 110.9 182 40.7
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 9.8e-23 110.9 197 39.6
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-22 110.5 193 39.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-22 110.2 183 40.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.7e-22 110.2 174 40.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-22 109.4 183 40.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.9e-22 109.4 123 52.8
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.7e-22 109.0 164 44.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.7e-22 109.0 185 39.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.9e-22 108.6 172 40.1
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 6.4e-22 108.2 195 40.0
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 8.3e-22 107.8 183 42.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.1e-21 107.5 187 40.1
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.9e-21 106.7 185 35.7
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-21 106.7 192 40.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.9e-21 106.7 192 40.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-21 106.3 193 40.4
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 9.2e-21 104.4 179 39.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.2e-20 104.0 194 37.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.6e-20 103.6 149 43.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.1e-20 103.2 189 38.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.5e-20 102.4 187 39.6
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.6e-20 102.1 149 45.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.0e-19 100.9 124 47.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.0e-19 99.4 151 43.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.9e-19 99.0 175 41.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 5.1e-19 98.6 112 50.9
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 5.1e-19 98.6 180 40.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.1e-19 98.6 203 35.5
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-18 97.4 175 40.6
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-18 97.1 194 39.7
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.5e-18 96.3 197 37.6
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.3e-18 95.9 156 39.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.6e-18 95.1 190 37.4
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 7.3e-18 94.7 183 41.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.6e-17 93.6 185 37.3
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.8e-17 92.8 158 39.9
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.2e-14 83.2 116 44.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.4e-13 79.7 172 37.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 9.2e-13 77.8 140 37.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-12 77.0 113 40.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.7e-12 76.3 155 35.5
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 6.0e-12 75.1 135 35.6
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.0e-11 74.3 166 34.3
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-09 67.4 70 50.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.2e-09 65.1 66 51.5
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.1e-09 64.7 166 31.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-08 63.9 83 43.4
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.2e-08 62.0 122 36.1
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 2.0e-07 60.1 194 34.0
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.4e-07 58.9 66 45.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.7e-06 57.0 118 31.4


User provided reference genes

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