Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p34130 Brassica napus HOM05D021518 ORTHO05D021940 2.4e-77 292.0 133 100.0
BolC3t18564H Brassica oleracea HOM05D021518 ORTHO05D021940 2.4e-45 185.7 133 71.4
A01p01260 Brassica napus HOM05D021518 ORTHO05D021940 7.0e-45 184.1 131 71.8
C03p45690 Brassica napus HOM05D021518 ORTHO05D021940 7.0e-45 184.1 131 71.8
BcaC02g10000 Brassica carinata HOM05D016295 ORTHO05D017554 4.2e-42 174.9 81 98.8
C03p63010 Brassica napus HOM05D003572 ORTHO05D004118 6.5e-35 151.0 133 61.7
BcaB07g33989 Brassica carinata HOM05D000305 ORTHO05D000065 8.8e-32 140.6 122 59.8
BcaC02g11221 Brassica carinata HOM05D021518 ORTHO05D021940 2.3e-19 99.4 56 83.9
BolC4t23442H Brassica oleracea HOM05D021518 ORTHO05D021940 2.3e-16 89.4 46 91.3
Thhalv10012921m.g Eutrema salsugineum HOM05D003572 ORTHO05D004118 9.5e-10 67.4 72 51.4
Sp6g17810 Schrenkiella parvula HOM05D003572 ORTHO05D004118 1.6e-09 66.6 72 50.0
BcaB08g35961 Brassica carinata HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
BcaC04g20184 Brassica carinata HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
A10p13160 Brassica napus HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
C09p46940 Brassica napus HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
BolC9t57542H Brassica oleracea HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
BraA10t43413Z Brassica rapa HOM05D003572 ORTHO05D004118 1.0e-08 63.9 72 50.0
Carub.0008s1630 Capsella rubella HOM05D003572 ORTHO05D004118 2.3e-08 62.8 72 48.6
CARHR269330 Cardamine hirsuta HOM05D003572 ORTHO05D004118 2.3e-08 62.8 72 50.0
AL840U10010 Arabidopsis lyrata HOM05D003572 ORTHO05D004118 3.1e-08 62.4 72 50.0
AL8G31520 Arabidopsis lyrata HOM05D003572 ORTHO05D004118 3.1e-08 62.4 72 50.0
AT5G55960 Arabidopsis thaliana HOM05D003572 ORTHO05D004118 3.1e-08 62.4 72 50.0
Aa31LG3G11870 Aethionema arabicum HOM05D003572 ORTHO05D004118 4.0e-08 62.0 72 45.8
THA.LOC104811681 Tarenaya hassleriana HOM05D003572 ORTHO05D004118 5.2e-08 61.6 72 47.2
BolC4t24974H Brassica oleracea HOM05D003572 ORTHO05D004118 9.8e-07 57.4 27 100.0
TWI38G2019 Tripterygium wilfordii HOM05D003572 ORTHO05D004118 9.8e-07 57.4 72 44.4
FvH4_3g42400 Fragaria vesca HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
FAN11G1338 Fragaria x ananassa HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
FAN16G1359 Fragaria x ananassa HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
FAN21G2470 Fragaria x ananassa HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
FAN25G0718 Fragaria x ananassa HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
FAN28G0643 Fragaria x ananassa HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
RcHm_v2.0_Chr5g0075891 Rosa chinensis HOM05D003572 ORTHO05D004118 2.2e-06 56.2 79 44.3
CsaV3_7G023890 Cucumis sativus L. HOM05D003572 ORTHO05D004118 2.9e-06 55.8 69 44.9
Prupe.6G027100 Prunus persica HOM05D003572 ORTHO05D004118 2.9e-06 55.8 72 45.8
unitig_62.g23309 Utricularia gibba HOM05D003572 ORTHO05D004118 2.9e-06 55.8 72 44.4
Dinv10359 Davidia involucrata HOM05D003572 ORTHO05D004118 3.7e-06 55.5 72 44.4
Glyma.14G011900 Glycine max HOM05D003572 ORTHO05D004118 4.9e-06 55.1 69 44.9
vmacro09625 Vaccinium macrocarpon HOM05D003572 ORTHO05D004118 4.9e-06 55.1 69 43.5
vmacro11611 Vaccinium macrocarpon HOM05D003572 ORTHO05D004118 4.9e-06 55.1 72 44.4
ClCG09G021500 Citrullus lanatus HOM05D003572 ORTHO05D004118 6.4e-06 54.7 69 44.9
MELO3C024962.2 Cucumis melo HOM05D003572 ORTHO05D004118 6.4e-06 54.7 69 44.9
Rhsim06G0232300 Rhododendron simsii HOM05D003572 ORTHO05D004118 6.4e-06 54.7 72 44.4
Dinv40882 Davidia involucrata HOM05D003572 ORTHO05D004118 8.3e-06 54.3 72 44.4
Duzib268G0100 Durio zibethinus HOM05D003572 ORTHO05D004118 8.3e-06 54.3 72 41.7
Phvul.008G280900 Phaseolus vulgaris HOM05D003572 ORTHO05D004118 8.3e-06 54.3 69 44.9
Rhsim04G0010700 Rhododendron simsii HOM05D003572 ORTHO05D004118 8.3e-06 54.3 72 43.1
THA.LOC104813455 Tarenaya hassleriana HOM05D003572 ORTHO05D004118 8.3e-06 54.3 72 41.7


User provided reference genes

Program Settings