Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p33240 Brassica napus HOM05D003423 ORTHO05D003910 4.0e-36 154.1 69 100.0
C04p28150 Brassica napus HOM05D003423 ORTHO05D003910 1.3e-34 149.1 69 97.1
BcaC02g10065 Brassica carinata HOM05D003423 ORTHO05D003910 2.4e-33 144.8 64 100.0
BolC4t24887H Brassica oleracea HOM05D003423 ORTHO05D003910 4.1e-33 144.1 64 98.4
BolC4t24358H Brassica oleracea HOM05D003423 ORTHO05D003910 1.3e-31 139.0 64 95.3
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 7.3e-22 106.7 63 69.8
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 2.4e-20 101.7 63 66.7
GSVIVG01014644001 Vitis vinifera HOM05D003423 ORTHO05D003910 3.1e-20 101.3 63 65.1
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 4.0e-20 100.9 63 65.1
Rhsim04G0013800 Rhododendron simsii HOM05D003423 ORTHO05D003910 6.9e-20 100.1 67 62.7
PGSC0003DMG400029797 Solanum tuberosum HOM05D003423 ORTHO05D003910 4.4e-19 97.4 65 58.5
Gorai.013G153900 Gossypium raimondii HOM05D003423 ORTHO05D003910 1.3e-18 95.9 63 60.3
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.3e-18 95.9 63 60.3
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.3e-18 95.9 63 60.3
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 8.4e-18 93.2 63 57.1
DCAR_017083 Daucus carota HOM05D003423 ORTHO05D003910 5.4e-17 90.5 60 58.3
Nitab4.5_0000163g0280 Nicotiana tabacum HOM05D003423 ORTHO05D003910 5.4e-17 90.5 65 55.4
Aa31LG10G260 Aethionema arabicum HOM05D003423 ORTHO05D003910 2.7e-16 88.2 67 58.2
Gohir.A13G106200 Gossypium hirsutum HOM05D003423 ORTHO05D003910 2.7e-16 88.2 60 58.3
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 5.1e-15 84.0 63 54.0
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 4.3e-14 80.9 63 55.6
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 7.3e-14 80.1 66 56.1
BcaC01g01534 Brassica carinata HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
A08p00550 Brassica napus HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
C03p92860 Brassica napus HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
BolC3t21592H Brassica oleracea HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
BolC3t21631H Brassica oleracea HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
BraA08t32074Z Brassica rapa HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
BraA08t32113Z Brassica rapa HOM05D003423 ORTHO05D003910 9.6e-14 79.7 67 56.7
Thecc.07G016500 Theobroma cacao HOM05D003423 ORTHO05D003910 1.3e-13 79.3 63 52.4
AT1G55915 Arabidopsis thaliana HOM05D003423 ORTHO05D003910 1.6e-13 79.0 67 55.2
C03p93330 Brassica napus HOM05D003423 ORTHO05D003910 2.1e-13 78.6 67 55.2
Gohir.D13G137300 Gossypium hirsutum HOM05D003423 ORTHO05D003910 2.1e-13 78.6 63 50.8
Gohir.A04G002900 Gossypium hirsutum HOM05D003423 ORTHO05D003910 2.8e-13 78.2 63 50.8
CAN.G790.42 Capsicum annuum HOM05D003423 ORTHO05D003910 3.6e-13 77.8 67 55.2
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 3.6e-13 77.8 63 54.0
Gohir.A01G137565 Gossypium hirsutum HOM05D003423 ORTHO05D003910 4.8e-13 77.4 53 56.6
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 4.8e-13 77.4 67 50.7
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 6.2e-13 77.0 63 50.8
AL1G64060 Arabidopsis lyrata HOM05D003423 ORTHO05D003910 1.1e-12 76.3 67 52.2
Thhalv10011589m.g Eutrema salsugineum HOM05D003423 ORTHO05D003910 1.8e-12 75.5 67 55.2
BcaC06g31883 Brassica carinata HOM05D003423 ORTHO05D003910 2.4e-12 75.1 67 55.2
Psat5g170040 Pisum sativum HOM05D003423 ORTHO05D003910 4.0e-12 74.3 65 47.7
Manes.03G139900 Manihot esculenta HOM05D003423 ORTHO05D003910 6.9e-12 73.6 67 47.8
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 1.5e-11 72.4 63 50.8
TWI38G0990 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 1.5e-11 72.4 67 47.8
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 2.0e-11 72.0 63 49.2
COL.COLO4_09809 Corchorus olitorius HOM05D003423 ORTHO05D003910 2.6e-11 71.6 63 49.2
Gohir.A04G133100 Gossypium hirsutum HOM05D003423 ORTHO05D003910 3.4e-11 71.2 46 58.7
Phvul.006G055600 Phaseolus vulgaris HOM05D003423 ORTHO05D003910 3.4e-11 71.2 67 47.8
Sed0002105 Sechium edule HOM05D003423 ORTHO05D003910 3.4e-11 71.2 63 47.6
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 7.6e-11 70.1 61 47.5
Sabra10G0194100 Salix brachista HOM05D003423 ORTHO05D003910 7.6e-11 70.1 61 49.2
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 9.9e-11 69.7 67 46.3
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.3e-10 69.3 63 50.8
CANSAT11G1165 Cannabis sativa HOM05D003423 ORTHO05D003910 1.7e-10 68.9 63 44.4
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 1.7e-10 68.9 63 49.2
Sp1g41520 Schrenkiella parvula HOM05D003423 ORTHO05D003910 2.2e-10 68.6 67 49.3
Sopen12g007570 Solanum pennellii HOM05D003423 ORTHO05D003910 2.2e-10 68.6 63 44.4
VMungo0540G0232 Vigna mungo HOM05D003423 ORTHO05D003910 2.2e-10 68.6 67 46.3
Solyc12g015660.2 Solanum lycopersicum HOM05D003423 ORTHO05D003910 2.9e-10 68.2 63 42.9
Gorai.010G207500 Gossypium raimondii HOM05D003423 ORTHO05D003910 4.9e-10 67.4 63 44.4
Nitab4.5_0002517g0010 Nicotiana tabacum HOM05D003423 ORTHO05D003910 6.4e-10 67.0 63 46.0
Peaxi162Scf00955g00007 Petunia axillaris HOM05D003423 ORTHO05D003910 1.4e-09 65.9 63 46.0
Duzib213G0099 Durio zibethinus HOM05D003423 ORTHO05D003910 1.9e-09 65.5 63 46.0
Atru.chr2.3667 Acer truncatum HOM05D003423 ORTHO05D003910 2.4e-09 65.1 63 44.4
Glyma.18G078800 Glycine max HOM05D003423 ORTHO05D003910 2.4e-09 65.1 67 44.8
AUR62036422 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.2e-09 64.7 63 46.0
AUR62036428 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.2e-09 64.7 63 46.0
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 5.4e-09 63.9 63 47.6
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 7.1e-09 63.5 67 44.8
HPP92_017868 Vanilla planifolia HOM05D003423 ORTHO05D003910 7.1e-09 63.5 67 43.3
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.2e-08 62.8 67 44.8
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.2e-08 62.8 67 44.8
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 1.6e-08 62.4 63 44.4
CARHR045630 Cardamine hirsuta HOM05D003423 ORTHO05D003910 2.1e-08 62.0 67 44.8
THA.LOC104810286 Tarenaya hassleriana HOM05D003423 ORTHO05D003910 2.7e-08 61.6 63 44.4
AUR62001338 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.5e-08 61.2 57 49.1
Lalb_Chr15g0081991 Lupinus albus HOM05D003423 ORTHO05D003910 3.5e-08 61.2 67 44.8
Cpa.g.sc12.172 Carica papaya HOM05D003423 ORTHO05D003910 4.6e-08 60.8 63 46.0
Actinidia21857 Actinidia chinensis HOM05D003423 ORTHO05D003910 6.0e-08 60.5 67 40.3
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 6.0e-08 60.5 63 44.4
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 7.9e-08 60.1 67 41.8
AUR62025667 Chenopodium quinoa HOM05D003423 ORTHO05D003910 1.3e-07 59.3 57 47.4
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 1.8e-07 58.9 67 43.3
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.8e-07 58.9 67 43.3
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 1.8e-07 58.9 67 40.3
Zm00001eb374280 Zea mays HOM05D003423 ORTHO05D003910 1.8e-07 58.9 63 39.7
Lsat_1_v5_gn_1_26441 Lactuca sativa HOM05D003423 ORTHO05D003910 3.9e-07 57.8 67 41.8
QL08p004807 Quercus lobata HOM05D003423 ORTHO05D003910 1.1e-06 56.2 54 44.4
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea HOM05D003423 ORTHO05D003910 1.5e-06 55.8 67 40.3
Sed0027119 Sechium edule HOM05D003423 ORTHO05D003910 1.5e-06 55.8 68 38.2
Haze_09806 Corylus avellana HOM05D003423 ORTHO05D003910 1.9e-06 55.5 63 39.7
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea HOM05D003423 ORTHO05D003910 2.5e-06 55.1 67 38.8
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea HOM05D003423 ORTHO05D003910 4.3e-06 54.3 67 40.3
HPP92_018337 Vanilla planifolia HOM05D003423 ORTHO05D003910 7.4e-06 53.5 67 38.8
Nn1g07481 Nelumbo nucifera HOM05D003423 ORTHO05D003910 9.6e-06 53.1 63 39.7


User provided reference genes

Program Settings