Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p33010 Brassica napus HOM05D000753 ORTHO05D017534 3.0e-66 255.0 126 100.0
C08p51100 Brassica napus HOM05D000753 ORTHO05D017534 1.2e-62 243.0 126 95.2
BolC8t52636H Brassica oleracea HOM05D000753 ORTHO05D017534 8.3e-56 220.3 122 91.0
BcaC02g10079 Brassica carinata HOM05D016796 ORTHO05D017534 2.4e-55 218.8 117 93.2
BcaC01g06826 Brassica carinata HOM05D000753 ORTHO05D017534 5.4e-55 217.6 113 95.6
BcaC07g38529 Brassica carinata HOM05D000753 ORTHO05D017534 4.3e-52 208.0 113 91.2
A01p36920 Brassica napus HOM05D000753 ORTHO05D003622 4.6e-38 161.4 82 97.6
BraA01t03751Z Brassica rapa HOM05D000753 ORTHO05D003622 4.6e-38 161.4 82 97.6
BolC4t24864H Brassica oleracea HOM05D000753 ORTHO05D017534 1.3e-37 159.8 79 100.0
BcaB04g20843 Brassica carinata HOM05D000753 ORTHO05D003622 2.3e-37 159.1 82 96.3
BcaC09g48700 Brassica carinata HOM05D000753 ORTHO05D003622 5.1e-37 157.9 82 96.3
C01p46810 Brassica napus HOM05D000753 ORTHO05D003622 5.1e-37 157.9 82 96.3
BolC1t04654H Brassica oleracea HOM05D000753 ORTHO05D003622 5.1e-37 157.9 82 96.3
Thhalv10020956m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 1.9e-36 156.0 82 95.1
BcaC05g28791 Brassica carinata HOM05D000753 ORTHO05D003622 1.1e-34 150.2 82 91.5
AT3G17430 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 6.8e-34 147.5 82 90.2
Carub.0003s1715 Capsella rubella HOM05D000753 ORTHO05D003622 8.9e-34 147.1 82 90.2
AL3G30510 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 2.0e-33 146.0 82 89.0
Sp3g15600 Schrenkiella parvula HOM05D000753 ORTHO05D003622 7.6e-33 144.1 82 90.2
CARHR092750 Cardamine hirsuta HOM05D000753 ORTHO05D003622 1.4e-31 139.8 82 86.6
BolC5t33640H Brassica oleracea HOM05D000753 ORTHO05D003622 1.1e-28 130.2 82 84.1
Aa31LG10G5530 Aethionema arabicum HOM05D000753 ORTHO05D003622 2.6e-25 119.0 85 74.1
BcaB06g25846 Brassica carinata HOM05D000753 ORTHO05D017534 5.8e-25 117.9 75 84.0
Sp1g35190 Schrenkiella parvula HOM05D000753 ORTHO05D003622 5.8e-25 117.9 81 75.3
Aa31LG8G4380 Aethionema arabicum HOM05D000753 ORTHO05D003622 1.3e-24 116.7 81 72.8
Thhalv10011587m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 4.9e-24 114.8 81 76.5
CARHR037860 Cardamine hirsuta HOM05D000753 ORTHO05D003622 6.4e-24 114.4 81 76.5
AL1G54820 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 1.1e-23 113.6 81 76.5
AT1G48230 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 1.4e-23 113.2 81 76.5
BcaB04g17456 Brassica carinata HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
BcaC07g37162 Brassica carinata HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
A08p05000 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
A08p05030 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
C08p05330 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
BraA08t32522Z Brassica rapa HOM05D000753 ORTHO05D003622 1.4e-23 113.2 82 74.4
THA.LOC104802615 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 7.1e-23 110.9 90 72.2
Carub.0001s3737 Capsella rubella HOM05D000753 ORTHO05D003622 1.0e-21 107.1 81 72.8
BcaC08g43015 Brassica carinata HOM05D000753 ORTHO05D003622 1.3e-21 106.7 81 72.8
A06p04620 Brassica napus HOM05D000753 ORTHO05D003622 1.3e-21 106.7 81 72.8
C06p02700 Brassica napus HOM05D000753 ORTHO05D003622 1.3e-21 106.7 81 72.8
BolC6t35396H Brassica oleracea HOM05D000753 ORTHO05D003622 1.3e-21 106.7 81 72.8
BraA06t23666Z Brassica rapa HOM05D000753 ORTHO05D003622 1.3e-21 106.7 81 72.8
THA.LOC104821811 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 1.9e-20 102.8 76 75.0
Duzib151G0280 Durio zibethinus HOM05D000753 ORTHO05D003622 2.5e-20 102.4 85 60.0
Duzib212G0655 Durio zibethinus HOM05D000753 ORTHO05D003622 2.5e-20 102.4 89 61.8
BcaB07g33781 Brassica carinata HOM05D000753 ORTHO05D003622 4.3e-20 101.7 83 71.1
arahy.Tifrunner.gnm1.ann1.G9V4C0 Arachis hypogaea HOM05D000753 ORTHO05D003622 5.6e-20 101.3 88 64.8
arahy.Tifrunner.gnm1.ann1.EDF5ZB Arachis hypogaea HOM05D000753 ORTHO05D003622 7.3e-20 100.9 88 64.8
Thecc.04G312300 Theobroma cacao HOM05D000753 ORTHO05D003622 9.6e-20 100.5 86 61.6
A05p32350 Brassica napus HOM05D000753 ORTHO05D003622 1.3e-19 100.1 82 69.5
Ca_26461_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 1.3e-19 100.1 87 63.2
BcaC08g43017 Brassica carinata HOM05D000753 ORTHO05D003622 2.8e-19 99.0 83 69.9
Ca_21380_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 3.6e-19 98.6 87 62.1
Ca_30148_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 3.6e-19 98.6 87 62.1
TPR.G12557 Trifolium pratense HOM05D000753 ORTHO05D003622 6.2e-19 97.8 88 62.5
Aqoxy5G00334 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 8.1e-19 97.4 84 60.7
ClCG04G007460 Citrullus lanatus HOM05D000753 ORTHO05D003622 1.1e-18 97.1 81 61.7
Ciclev10005167m.g Citrus clementina HOM05D000753 ORTHO05D003622 1.4e-18 96.7 89 64.0
Psat0s2012g0120 Pisum sativum HOM05D000753 ORTHO05D003622 1.4e-18 96.7 88 62.5
MELO3C006748.2 Cucumis melo HOM05D000753 ORTHO05D003622 1.8e-18 96.3 83 62.7
MELO3C003206.2 Cucumis melo HOM05D000753 ORTHO05D003622 2.4e-18 95.9 81 60.5
CsaV3_4G025800 Cucumis sativus L. HOM05D000753 ORTHO05D003622 3.1e-18 95.5 81 59.3
Cpa.g.sc146.29 Carica papaya HOM05D000753 ORTHO05D003622 4.0e-18 95.1 90 64.4
Eucgr.B03955 Eucalyptus grandis HOM05D000753 ORTHO05D003622 5.3e-18 94.7 90 57.8
Phvul.009G219500 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 5.3e-18 94.7 88 59.1
MD13G1141000 Malus domestica HOM05D000753 ORTHO05D003622 6.9e-18 94.4 83 62.7
ClCG05G006840 Citrullus lanatus HOM05D000753 ORTHO05D003622 9.0e-18 94.0 82 61.0
Lalb_Chr11g0073531 Lupinus albus HOM05D000753 ORTHO05D003622 9.0e-18 94.0 84 64.3
Manes.03G211400 Manihot esculenta HOM05D000753 ORTHO05D003622 9.0e-18 94.0 90 61.1
Prupe.1G106200 Prunus persica HOM05D000753 ORTHO05D003622 9.0e-18 94.0 83 61.4
QL06p014135 Quercus lobata HOM05D000753 ORTHO05D003622 9.0e-18 94.0 85 63.5
Phvul.003G121200 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 1.2e-17 93.6 86 60.5
CsaV3_3G015490 Cucumis sativus L. HOM05D000753 ORTHO05D003622 1.5e-17 93.2 82 59.8
Glyma.13G120000 Glycine max HOM05D000753 ORTHO05D003622 2.6e-17 92.4 87 57.5
Lj6g0005825 Lotus japonicus HOM05D000753 ORTHO05D003622 2.6e-17 92.4 84 64.3
C05p49000 Brassica napus HOM05D000753 ORTHO05D003622 5.8e-17 91.3 49 91.8
Medtr4g123900 Medicago truncatula HOM05D000753 ORTHO05D003622 5.8e-17 91.3 88 61.4
Gohir.A01G036200 Gossypium hirsutum HOM05D000753 ORTHO05D003622 7.6e-17 90.9 82 58.5
Nn6g35752 Nelumbo nucifera HOM05D000753 ORTHO05D003622 7.6e-17 90.9 85 54.1
Gohir.D01G023595 Gossypium hirsutum HOM05D000753 ORTHO05D003622 9.9e-17 90.5 82 58.5
Gorai.002G032000 Gossypium raimondii HOM05D000753 ORTHO05D003622 9.9e-17 90.5 82 58.5
MD16G1137100 Malus domestica HOM05D000753 ORTHO05D003622 9.9e-17 90.5 83 60.2
TWI09G0158 Tripterygium wilfordii HOM05D000753 ORTHO05D003622 1.3e-16 90.1 90 57.8
Cfa015724 Carpinus fangiana HOM05D000753 ORTHO05D003622 1.7e-16 89.7 85 61.2
Glyma.09G078700 Glycine max HOM05D000753 ORTHO05D003622 1.7e-16 89.7 89 58.4
Glyma.15G188900 Glycine max HOM05D000753 ORTHO05D003622 1.7e-16 89.7 89 58.4
Sed0025915 Sechium edule HOM05D000753 ORTHO05D003622 1.7e-16 89.7 83 60.2
Dinv29515 Davidia involucrata HOM05D000753 ORTHO05D003622 2.9e-16 89.0 87 59.8
VMungo1215G1179 Vigna mungo HOM05D000753 ORTHO05D003622 2.9e-16 89.0 89 58.4
Atru.chr4.3141 Acer truncatum HOM05D000753 ORTHO05D003622 3.8e-16 88.6 83 57.8
Actinidia18504 Actinidia chinensis HOM05D000753 ORTHO05D003622 3.8e-16 88.6 89 57.3
DCAR_030422 Daucus carota HOM05D000753 ORTHO05D003622 3.8e-16 88.6 89 56.2
HanXRQChr09g0245821 Helianthus annuus HOM05D000753 ORTHO05D003622 3.8e-16 88.6 91 53.8
Gohir.A09G067300 Gossypium hirsutum HOM05D000753 ORTHO05D003622 8.4e-16 87.4 84 57.1
VMungo1309G2024 Vigna mungo HOM05D000753 ORTHO05D003622 8.4e-16 87.4 89 57.3
Glyma.17G040300 Glycine max HOM05D000753 ORTHO05D003622 1.4e-15 86.7 88 58.0
Lj6C700T8 Lonicera japonica HOM05D000753 ORTHO05D003622 1.9e-15 86.3 91 57.1
Lalb_Chr08g0233031 Lupinus albus HOM05D000753 ORTHO05D003622 1.9e-15 86.3 85 65.9
GSVIVG01017682001 Vitis vinifera HOM05D000753 ORTHO05D003622 1.9e-15 86.3 92 55.4
Potri.010G001700 Populus trichocarpa HOM05D000753 ORTHO05D003622 2.4e-15 85.9 85 56.5
Rhsim04G0247900 Rhododendron simsii HOM05D000753 ORTHO05D003622 3.2e-15 85.5 87 59.8
TAR365G0528 Trochodendron aralioides HOM05D000753 ORTHO05D010249 3.2e-15 85.5 94 53.2
TAR365G0537 Trochodendron aralioides HOM05D000753 ORTHO05D003622 3.2e-15 85.5 95 53.7
CANSAT78G2121 Cannabis sativa HOM05D000753 ORTHO05D003622 4.2e-15 85.1 82 61.0
RcHm_v2.0_Chr4g0427391 Rosa chinensis HOM05D000753 ORTHO05D003622 4.2e-15 85.1 86 57.0
CSS0042988 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 5.4e-15 84.7 89 55.1
CiPaw.01G129900 Carya illinoinensis HOM05D000753 ORTHO05D003622 5.4e-15 84.7 85 60.0
AUR62039325 Chenopodium quinoa HOM05D000753 ORTHO05D003622 5.4e-15 84.7 93 53.8
CSS0036063 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 7.1e-15 84.3 92 54.3
FvH4_4g21460 Fragaria vesca HOM05D000753 ORTHO05D003622 9.3e-15 84.0 86 54.7
FAN07G0388 Fragaria x ananassa HOM05D000753 ORTHO05D003622 1.2e-14 83.6 85 54.1
FAN17G2049 Fragaria x ananassa HOM05D000753 ORTHO05D003622 1.2e-14 83.6 85 54.1
AUR62022452 Chenopodium quinoa HOM05D000753 ORTHO05D003622 1.6e-14 83.2 93 53.8
ECA246G1535 Erigeron canadensis HOM05D000753 ORTHO05D003622 1.6e-14 83.2 89 57.3
Gohir.D09G066900 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.1e-14 82.8 84 53.6
Gorai.006G081400 Gossypium raimondii HOM05D000753 ORTHO05D003622 2.1e-14 82.8 84 53.6
Sabra10G0001400 Salix brachista HOM05D000753 ORTHO05D003622 2.7e-14 82.4 85 55.3
Oeu037625.1 Olea europaea HOM05D000753 ORTHO05D003622 3.5e-14 82.0 81 55.6
Ah.05g168870 Amaranthus hybridus HOM05D000753 ORTHO05D003622 4.6e-14 81.6 85 57.6
EL10Ac1g01769 Beta vulgaris HOM05D000753 ORTHO05D003622 4.6e-14 81.6 92 54.3
Eucgr.H04120 Eucalyptus grandis HOM05D000753 ORTHO05D003622 4.6e-14 81.6 84 54.8
DCAR_023400 Daucus carota HOM05D000753 ORTHO05D003622 1.3e-13 80.1 116 44.0
Lsat_1_v5_gn_1_39900 Lactuca sativa HOM05D000753 ORTHO05D003622 1.3e-13 80.1 84 53.6
ATR1136G027 Amborella trichopoda HOM05D000753 ORTHO05D003622 1.7e-13 79.7 87 52.9
Dinv33163 Davidia involucrata HOM05D000753 ORTHO05D003622 1.7e-13 79.7 87 50.6
vmacro02364 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 1.7e-13 79.7 86 52.3
CSS0038867 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 3.9e-13 78.6 90 51.1
COL.COLO4_34522 Corchorus olitorius HOM05D000753 ORTHO05D017534 3.9e-13 78.6 69 58.0
Rhsim13G0000100 Rhododendron simsii HOM05D000753 ORTHO05D003622 3.9e-13 78.6 86 52.3
DCAR_002549 Daucus carota HOM05D000753 ORTHO05D003622 5.1e-13 78.2 80 50.0
Aqoxy2G00409 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 6.6e-13 77.8 78 55.1
Sc10g0008510 Simmondsia chinensis HOM05D000753 ORTHO05D003622 6.6e-13 77.8 89 50.6
Solyc02g066910.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 8.7e-13 77.4 85 54.1
Sopen02g016100 Solanum pennellii HOM05D000753 ORTHO05D003622 8.7e-13 77.4 85 54.1
Actinidia06398 Actinidia chinensis HOM05D000753 ORTHO05D003622 1.5e-12 76.6 89 51.7
CAN.G398.22 Capsicum annuum HOM05D000753 ORTHO05D003622 1.5e-12 76.6 85 52.9
Cc01_g17330 Coffea canephora HOM05D000753 ORTHO05D003622 1.5e-12 76.6 91 50.5
Peaxi162Scf00166g00427 Petunia axillaris HOM05D000753 ORTHO05D003622 1.5e-12 76.6 90 52.2
Hund26619 Selenicereus undatus HOM05D000753 ORTHO05D003622 1.5e-12 76.6 92 51.1
Dinv12092 Davidia involucrata HOM05D000753 ORTHO05D003622 1.9e-12 76.3 87 50.6
Hma1.2p1_1160F.1_g262520 Hydrangea macrophylla HOM05D000753 ORTHO05D003622 1.9e-12 76.3 85 52.9
DCAR_026950 Daucus carota HOM05D000753 ORTHO05D003622 2.5e-12 75.9 114 40.4
CDE07G1952 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 3.3e-12 75.5 90 53.3
Solyc02g088900.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 4.3e-12 75.1 88 51.1
Sopen02g033590 Solanum pennellii HOM05D000753 ORTHO05D003622 4.3e-12 75.1 88 51.1
CiPaw.08G084100 Carya illinoinensis HOM05D000753 ORTHO05D003622 9.6e-12 73.9 92 48.9
PGSC0003DMG400025156 Solanum tuberosum HOM05D000753 ORTHO05D003622 9.6e-12 73.9 85 51.8
CSS0017685 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 1.6e-11 73.2 93 49.5
Nitab4.5_0007320g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 1.6e-11 73.2 90 51.1
unitig_26.g10602 Utricularia gibba HOM05D000753 ORTHO05D003622 1.6e-11 73.2 83 53.0
CAN.G497.100 Capsicum annuum HOM05D000753 ORTHO05D003622 2.1e-11 72.8 90 48.9
Nitab4.5_0003841g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 2.8e-11 72.4 93 49.5
SGA_v2.0_scaffold227G43199 Striga asiatica HOM05D000753 ORTHO05D003622 2.8e-11 72.4 89 44.9
Dinv18026 Davidia involucrata HOM05D000753 ORTHO05D003622 4.8e-11 71.6 80 58.8
CiPaw.07G124100 Carya illinoinensis HOM05D000753 ORTHO05D003622 6.2e-11 71.2 88 42.0
CDE04G3027 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 6.2e-11 71.2 90 51.1
MBI06_g17220_MAGBIO Magnolia biondii HOM05D000753 ORTHO05D003622 1.1e-10 70.5 88 47.7
Oeu016619.1 Olea europaea HOM05D000753 ORTHO05D003622 1.4e-10 70.1 92 44.6
Potri.008G214300 Populus trichocarpa HOM05D000753 ORTHO05D003622 1.4e-10 70.1 85 52.9
PSO832G0943 Papaver somniferum HOM05D000753 ORTHO05D003622 1.8e-10 69.7 89 46.1
Migut.N00004 Erythranthe guttata HOM05D000753 ORTHO05D003622 3.1e-10 68.9 77 49.4
PSO210G5412 Papaver somniferum HOM05D000753 ORTHO05D003622 3.1e-10 68.9 94 44.7
SGA_v2.0_scaffold449G51792 Striga asiatica HOM05D000753 ORTHO05D003622 6.9e-10 67.8 90 43.3
FAN12G3361 Fragaria x ananassa HOM05D000753 ORTHO05D003622 9.0e-10 67.4 89 43.8
PGSC0003DMG400001459 Solanum tuberosum HOM05D000753 ORTHO05D003622 1.2e-09 67.0 75 54.7
Haze_00774 Corylus avellana HOM05D000753 ORTHO05D003622 4.5e-09 65.1 147 35.4
DCAR_012306 Daucus carota HOM05D000753 ORTHO05D003622 4.5e-09 65.1 83 49.4
GSVIVG01028211001 Vitis vinifera HOM05D000753 ORTHO05D003622 4.5e-09 65.1 93 47.3
TAR633G1520 Trochodendron aralioides HOM05D000753 ORTHO05D003622 9.9e-09 63.9 71 49.3
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 2.2e-08 62.8 70 52.9
Lj1g0018517 Lotus japonicus HOM05D000753 ORTHO05D003622 8.4e-08 60.8 75 46.7
arahy.Tifrunner.gnm1.ann1.B6KC6C Arachis hypogaea HOM05D000753 ORTHO05D003622 1.1e-07 60.5 55 52.7
arahy.Tifrunner.gnm1.ann1.XT3RX0 Arachis hypogaea HOM05D000753 ORTHO05D003622 1.4e-07 60.1 55 50.9
Glyma.19G220400 Glycine max HOM05D000753 ORTHO05D003622 1.9e-07 59.7 74 47.3
Lj1A9G43 Lonicera japonica HOM05D000753 ORTHO05D003622 1.9e-07 59.7 72 51.4
Zm00001eb054220 Zea mays HOM05D000753 ORTHO05D003622 1.9e-07 59.7 88 46.6
Lalb_Chr18g0046481 Lupinus albus HOM05D000753 ORTHO05D003622 3.2e-07 58.9 74 45.9
MSTRG.9728 Avicennia marina HOM05D000753 ORTHO05D003622 4.2e-07 58.5 74 45.9
Migut.G01157 Erythranthe guttata HOM05D000753 ORTHO05D003622 5.5e-07 58.2 85 42.4
vmacro08008 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 5.5e-07 58.2 84 47.6
Nitab4.5_0000212g0260 Nicotiana tabacum HOM05D000753 ORTHO05D003622 2.7e-06 55.8 39 69.2
Glyma.03G223200 Glycine max HOM05D000753 ORTHO05D003622 3.5e-06 55.5 73 46.6
SEGI_24452 Sequoiadendron giganteum HOM05D000753 ORTHO05D003622 3.5e-06 55.5 80 46.2
HPP92_003370 Vanilla planifolia HOM05D000753 ORTHO05D003622 4.6e-06 55.1 95 35.8


User provided reference genes

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