Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p30100 Brassica napus HOM05D000717 ORTHO05D024168 8.7e-63 243.4 120 100.0
BolC4t24542H Brassica oleracea HOM05D000717 ORTHO05D024168 1.6e-56 222.6 112 99.1
BcaC02g10347 Brassica carinata HOM05D000717 ORTHO05D024168 3.5e-27 125.2 64 98.4
BcaC02g10348 Brassica carinata HOM05D000717 ORTHO05D024168 3.5e-27 125.2 64 98.4
Sp2g18180 Schrenkiella parvula HOM05D000717 ORTHO05D000555 7.7e-19 97.4 61 80.3
Carub.0005s0861 Capsella rubella HOM05D000717 ORTHO05D000555 3.2e-17 92.0 61 75.4
Thhalv10004179m.g Eutrema salsugineum HOM05D000717 ORTHO05D000555 3.2e-17 92.0 61 78.7
BolC2t11662H Brassica oleracea HOM05D000717 ORTHO05D000555 5.5e-17 91.3 63 82.5
CARHR153490 Cardamine hirsuta HOM05D000717 ORTHO05D000555 5.5e-17 91.3 61 75.4
C02p56070 Brassica napus HOM05D000717 ORTHO05D000555 1.2e-16 90.1 63 81.0
A02p37070 Brassica napus HOM05D000717 ORTHO05D000555 2.1e-16 89.4 63 81.0
BraA02t08693Z Brassica rapa HOM05D000717 ORTHO05D000555 2.1e-16 89.4 63 81.0
Aa31LG9G16870 Aethionema arabicum HOM05D000717 ORTHO05D000555 8.0e-16 87.4 61 73.8
A06p39690 Brassica napus HOM05D000717 ORTHO05D000555 1.4e-15 86.7 63 76.2
BraA06t26884Z Brassica rapa HOM05D000717 ORTHO05D000555 1.4e-15 86.7 63 76.2
BcaC04g23817 Brassica carinata HOM05D000717 ORTHO05D000555 2.3e-15 85.9 61 75.4
BcaC04g23822 Brassica carinata HOM05D000717 ORTHO05D000555 2.3e-15 85.9 61 75.4
BcaC06g33721 Brassica carinata HOM05D000717 ORTHO05D000555 2.3e-15 85.9 65 73.8
C07p38580 Brassica napus HOM05D000717 ORTHO05D000555 2.3e-15 85.9 65 73.8
BolC7t44379H Brassica oleracea HOM05D000717 ORTHO05D000555 2.3e-15 85.9 65 73.8
Aa31LG2G3700 Aethionema arabicum HOM05D000717 ORTHO05D000555 4.0e-15 85.1 61 73.8
BcaC06g30845 Brassica carinata HOM05D000717 ORTHO05D000555 6.8e-15 84.3 68 67.6
BcaB04g19528 Brassica carinata HOM05D000717 ORTHO05D000555 1.5e-14 83.2 61 75.4
AL5G20100 Arabidopsis lyrata HOM05D000717 ORTHO05D000555 2.0e-14 82.8 61 68.9
A09p04200 Brassica napus HOM05D000717 ORTHO05D000555 2.0e-14 82.8 62 75.8
BcaC04g23811 Brassica carinata HOM05D000717 ORTHO05D000555 5.7e-14 81.3 62 74.2
C09p04420 Brassica napus HOM05D000717 ORTHO05D000555 9.8e-14 80.5 62 74.2
BolC9t53372H Brassica oleracea HOM05D000717 ORTHO05D000555 9.8e-14 80.5 62 74.2
BraA09t36057Z Brassica rapa HOM05D000717 ORTHO05D000555 1.7e-13 79.7 62 72.6
AT3G30390 Arabidopsis thaliana HOM05D000717 ORTHO05D000555 2.2e-13 79.3 58 67.2
THA.LOC104805536 Tarenaya hassleriana HOM05D000717 ORTHO05D000555 6.3e-13 77.8 50 76.0
THA.LOC104823877 Tarenaya hassleriana HOM05D000717 ORTHO05D000555 7.0e-12 74.3 61 62.3
Thhalv10019785m.g Eutrema salsugineum HOM05D000717 ORTHO05D024630 2.0e-11 72.8 55 69.1
Duzib133G0330 Durio zibethinus HOM05D000717 ORTHO05D000555 2.7e-11 72.4 64 59.4
Thecc.04G110500 Theobroma cacao HOM05D000717 ORTHO05D000555 4.5e-11 71.6 64 59.4
Gohir.A11G160800 Gossypium hirsutum HOM05D000717 ORTHO05D000555 1.3e-10 70.1 64 57.8
Gohir.D11G167100 Gossypium hirsutum HOM05D000717 ORTHO05D000555 1.3e-10 70.1 64 57.8
Gorai.007G178200 Gossypium raimondii HOM05D000717 ORTHO05D000555 1.3e-10 70.1 64 57.8
Duzib138G0889 Durio zibethinus HOM05D000717 ORTHO05D000555 2.3e-10 69.3 64 57.8
Medtr6g016275 Medicago truncatula HOM05D000717 ORTHO05D000555 8.6e-10 67.4 49 69.4
Gohir.D07G185500 Gossypium hirsutum HOM05D000717 ORTHO05D000555 1.9e-09 66.2 64 56.2
Gorai.001G206000 Gossypium raimondii HOM05D000717 ORTHO05D000555 1.9e-09 66.2 64 56.2
COL.COLO4_00318 Corchorus olitorius HOM05D000717 ORTHO05D000555 2.5e-09 65.9 64 54.7
AUR62009457 Chenopodium quinoa HOM05D000717 ORTHO05D000555 3.3e-09 65.5 64 56.2
Haze_14357 Corylus avellana HOM05D000717 ORTHO05D000555 3.3e-09 65.5 64 54.7
Gohir.D12G056200 Gossypium hirsutum HOM05D000717 ORTHO05D000555 3.3e-09 65.5 64 53.1
Gorai.008G059300 Gossypium raimondii HOM05D000717 ORTHO05D000555 3.3e-09 65.5 64 53.1
MSTRG.2966 Avicennia marina HOM05D000717 ORTHO05D000555 4.2e-09 65.1 51 60.8
Atru.chr8.587 Acer truncatum HOM05D000717 ORTHO05D000555 5.5e-09 64.7 63 52.4
Cfa007717 Carpinus fangiana HOM05D000717 ORTHO05D000555 5.5e-09 64.7 64 54.7
Duzib211G0270 Durio zibethinus HOM05D000717 ORTHO05D000555 5.5e-09 64.7 43 69.8
Gohir.A07G177500 Gossypium hirsutum HOM05D000717 ORTHO05D000555 5.5e-09 64.7 63 55.6
Gohir.A12G056800 Gossypium hirsutum HOM05D000717 ORTHO05D000555 5.5e-09 64.7 64 51.6
MD17G1067800 Malus domestica HOM05D000717 ORTHO05D000555 5.5e-09 64.7 43 69.8
Lj4A127T89 Lonicera japonica HOM05D000717 ORTHO05D000555 7.2e-09 64.3 52 65.4
AUR62023139 Chenopodium quinoa HOM05D000717 ORTHO05D000555 9.5e-09 63.9 43 72.1
arahy.Tifrunner.gnm1.ann1.AZC10Q Arachis hypogaea HOM05D000717 ORTHO05D000555 1.2e-08 63.5 40 75.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.2e-08 63.5 40 75.0
ECA232G0605 Erigeron canadensis HOM05D000717 ORTHO05D000555 1.2e-08 63.5 51 56.9
Lsat_1_v5_gn_4_173900 Lactuca sativa HOM05D000717 ORTHO05D000555 1.2e-08 63.5 53 58.5
MD09G1077400 Malus domestica HOM05D000717 ORTHO05D000555 1.2e-08 63.5 43 69.8
Medtr7g017630 Medicago truncatula HOM05D000717 ORTHO05D000555 1.6e-08 63.2 69 55.1
Lalb_Chr04g0258301 Lupinus albus HOM05D000717 ORTHO05D000555 2.1e-08 62.8 43 72.1
RcHm_v2.0_Chr2g0164381 Rosa chinensis HOM05D000717 ORTHO05D000555 2.1e-08 62.8 64 51.6
Sp7g03120 Schrenkiella parvula HOM05D000717 ORTHO05D000555 2.1e-08 62.8 47 70.2
SGA_v2.0_scaffold52G19061 Striga asiatica HOM05D000717 ORTHO05D000555 2.1e-08 62.8 55 56.4
unitig_736.g22263 Utricularia gibba HOM05D000717 ORTHO05D000555 2.1e-08 62.8 53 58.5
unitig_899.g15115 Utricularia gibba HOM05D000717 ORTHO05D000555 2.1e-08 62.8 53 60.4
VMungo1383G1802 Vigna mungo HOM05D000717 ORTHO05D000555 2.1e-08 62.8 42 76.2
CANSAT64G1892 Cannabis sativa HOM05D000717 ORTHO05D000555 2.8e-08 62.4 43 74.4
Cpa.g.sc14.257 Carica papaya HOM05D000717 ORTHO05D000555 2.8e-08 62.4 64 53.1
CDE02G1363 Ceratophyllum demersum HOM05D000717 ORTHO05D000555 2.8e-08 62.4 43 69.8
Ca_06963_v3 Cicer arietinum L. HOM05D000717 ORTHO05D000555 2.8e-08 62.4 57 59.6
DCAR_026294 Daucus carota HOM05D000717 ORTHO05D000555 2.8e-08 62.4 51 56.9
HanXRQChr15g0489861 Helianthus annuus HOM05D000717 ORTHO05D000555 2.8e-08 62.4 53 54.7
PGR004G1798 Punica granatum HOM05D000717 ORTHO05D000555 2.8e-08 62.4 64 51.6
SGA_v2.0_scaffold4G02352 Striga asiatica HOM05D000717 ORTHO05D000555 2.8e-08 62.4 51 58.8
CSS0014870 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 3.6e-08 62.0 43 67.4
CiPaw.04G051000 Carya illinoinensis HOM05D000717 ORTHO05D000555 3.6e-08 62.0 52 59.6
CDE05G3215 Ceratophyllum demersum HOM05D000717 ORTHO05D000555 3.6e-08 62.0 43 69.8
Eucgr.I02085 Eucalyptus grandis HOM05D000717 ORTHO05D000555 3.6e-08 62.0 64 51.6
Lalb_Chr17g0336751 Lupinus albus HOM05D000717 ORTHO05D000555 3.6e-08 62.0 43 69.8
TAR374G1138 Trochodendron aralioides HOM05D000717 ORTHO05D000555 3.6e-08 62.0 59 52.5
TAR622G0751 Trochodendron aralioides HOM05D000717 ORTHO05D000555 3.6e-08 62.0 40 70.0
TAR629G3079 Trochodendron aralioides HOM05D000717 ORTHO05D024168 3.6e-08 62.0 43 67.4
EL10Ac2g04413 Beta vulgaris HOM05D000717 ORTHO05D000555 4.7e-08 61.6 43 72.1
Dinv34892 Davidia involucrata HOM05D000717 ORTHO05D000555 4.7e-08 61.6 50 60.0
Lj2g0018667 Lotus japonicus HOM05D000717 ORTHO05D000555 4.7e-08 61.6 43 72.1
Lalb_Chr10g0092541 Lupinus albus HOM05D000717 ORTHO05D000555 4.7e-08 61.6 43 69.8
Prupe.3G246600 Prunus persica HOM05D000717 ORTHO05D000555 4.7e-08 61.6 43 72.1
Hund13663 Selenicereus undatus HOM05D000717 ORTHO05D000555 4.7e-08 61.6 43 72.1
Aqoxy3G00571 Aquilegia oxysepala HOM05D000717 ORTHO05D000555 6.1e-08 61.2 54 57.4
Nn4g23571 Nelumbo nucifera HOM05D000717 ORTHO05D000555 6.1e-08 61.2 53 58.5
Peaxi162Scf00019g00321 Petunia axillaris HOM05D000717 ORTHO05D000555 6.1e-08 61.2 51 58.8
Psat3g194360 Pisum sativum HOM05D000717 ORTHO05D000555 6.1e-08 61.2 42 76.2
Potri.004G111400 Populus trichocarpa HOM05D000717 ORTHO05D000555 6.1e-08 61.2 43 72.1
Sabra04G0073000 Salix brachista HOM05D000717 ORTHO05D000555 6.1e-08 61.2 43 72.1
Sabra16G0160700 Salix brachista HOM05D002512 ORTHO05D002660 6.1e-08 61.2 43 72.1
Sabra17G0089300 Salix brachista HOM05D000717 ORTHO05D000555 6.1e-08 61.2 43 72.1
ATR0292G001 Amborella trichopoda HOM05D000717 ORTHO05D000555 8.0e-08 60.8 51 58.8
Glyma.18G276800 Glycine max HOM05D000717 ORTHO05D000555 8.0e-08 60.8 58 60.3
Lj1g0023713 Lotus japonicus HOM05D000717 ORTHO05D000555 8.0e-08 60.8 53 64.2
Prupe.1G295800 Prunus persica HOM05D000717 ORTHO05D000555 8.0e-08 60.8 62 54.8
Sabra05G0113600 Salix brachista HOM05D000717 ORTHO05D000555 8.0e-08 60.8 40 75.0
Glyma.19G037400 Glycine max HOM05D000717 ORTHO05D000555 1.0e-07 60.5 43 72.1
Nitab4.5_0002171g0090 Nicotiana tabacum HOM05D000717 ORTHO05D000555 1.0e-07 60.5 51 58.8
Nitab4.5_0002978g0050 Nicotiana tabacum HOM05D000717 ORTHO05D000555 1.0e-07 60.5 51 58.8
QL02p063571 Quercus lobata HOM05D000717 ORTHO05D000555 1.0e-07 60.5 51 66.7
BcaC02g09669 Brassica carinata HOM05D000717 ORTHO05D000555 1.4e-07 60.1 41 75.6
A04p11650 Brassica napus HOM05D000717 ORTHO05D000555 1.4e-07 60.1 41 75.6
C04p45380 Brassica napus HOM05D000717 ORTHO05D000555 1.4e-07 60.1 41 75.6
BolC4t26120H Brassica oleracea HOM05D000717 ORTHO05D000555 1.4e-07 60.1 41 75.6
BraA04t16833Z Brassica rapa HOM05D000717 ORTHO05D000555 1.4e-07 60.1 41 75.6
FAN02G0540 Fragaria x ananassa HOM05D000717 ORTHO05D000555 1.4e-07 60.1 63 54.0
HanXRQChr15g0464921 Helianthus annuus HOM05D000717 ORTHO05D000555 1.4e-07 60.1 43 62.8
Nn3g17575 Nelumbo nucifera HOM05D000717 ORTHO05D000555 1.4e-07 60.1 57 52.6
Psat1g066200 Pisum sativum HOM05D000717 ORTHO05D000555 1.4e-07 60.1 56 55.4
Sabra15G0038400 Salix brachista HOM05D000717 ORTHO05D000555 1.4e-07 60.1 43 69.8
FAN05G4139 Fragaria x ananassa HOM05D000717 ORTHO05D000555 1.8e-07 59.7 64 51.6
Glyma.08G254200 Glycine max HOM05D000717 ORTHO05D000555 1.8e-07 59.7 42 73.8
Manes.02G061400 Manihot esculenta HOM05D000717 ORTHO05D000555 1.8e-07 59.7 39 69.2
Phvul.008G024100 Phaseolus vulgaris HOM05D000717 ORTHO05D000555 1.8e-07 59.7 42 73.8
Potri.017G106300 Populus trichocarpa HOM05D000717 ORTHO05D000555 1.8e-07 59.7 43 69.8
Sabra16G0095000 Salix brachista HOM05D000717 ORTHO05D000555 1.8e-07 59.7 43 72.1
SalBow1G5501 Salvia bowleyana HOM05D000717 ORTHO05D000555 1.8e-07 59.7 53 58.5
CAN.G93.46 Capsicum annuum HOM05D000717 ORTHO05D000555 2.3e-07 59.3 51 54.9
Ca_20755_v3 Cicer arietinum L. HOM05D000717 ORTHO05D000555 2.3e-07 59.3 55 58.2
Phvul.004G045200 Phaseolus vulgaris HOM05D000717 ORTHO05D000555 2.3e-07 59.3 53 58.5
Psat1g064440 Pisum sativum HOM05D000717 ORTHO05D000555 2.3e-07 59.3 43 69.8
CAN.G497.43 Capsicum annuum HOM05D000717 ORTHO05D000555 3.0e-07 58.9 57 57.9
Migut.H00574 Erythranthe guttata HOM05D000717 ORTHO05D000555 3.0e-07 58.9 56 51.8
MBI14_g08225_MAGBIO Magnolia biondii HOM05D000717 ORTHO05D000555 3.0e-07 58.9 52 55.8
Medtr6g016295 Medicago truncatula HOM05D000717 ORTHO05D000555 3.0e-07 58.9 57 57.9
Nitab4.5_0003203g0050 Nicotiana tabacum HOM05D000717 ORTHO05D000555 3.0e-07 58.9 51 56.9
Sopen02g034160 Solanum pennellii HOM05D000717 ORTHO05D000555 3.0e-07 58.9 58 53.4
TPR.G3301 Trifolium pratense HOM05D000717 ORTHO05D000555 3.0e-07 58.9 41 75.6
CSS0014663 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 4.0e-07 58.5 43 67.4
Cc07_g04660 Coffea canephora HOM05D000717 ORTHO05D000555 4.0e-07 58.5 51 58.8
FvH4_6g46060 Fragaria vesca HOM05D000717 ORTHO05D000555 4.0e-07 58.5 64 51.6
FAN09G1931 Fragaria x ananassa HOM05D000717 ORTHO05D000555 4.0e-07 58.5 64 51.6
FAN14G4810 Fragaria x ananassa HOM05D000717 ORTHO05D000555 4.0e-07 58.5 64 51.6
Lj6A773T126 Lonicera japonica HOM05D000717 ORTHO05D000555 4.0e-07 58.5 40 72.5
Lju361C12T8 Lonicera japonica HOM05D000717 ORTHO05D000555 4.0e-07 58.5 43 67.4
Nitab4.5_0002249g0080 Nicotiana tabacum HOM05D000717 ORTHO05D000555 4.0e-07 58.5 51 56.9
Peaxi162Scf00020g02020 Petunia axillaris HOM05D000717 ORTHO05D000555 4.0e-07 58.5 51 58.8
Phvul.004G045100 Phaseolus vulgaris HOM05D000717 ORTHO05D000555 4.0e-07 58.5 43 72.1
Rhsim08G0078600 Rhododendron simsii HOM05D000717 ORTHO05D000555 4.0e-07 58.5 43 62.8
Sp7g03110 Schrenkiella parvula HOM05D000717 ORTHO05D000555 4.0e-07 58.5 47 63.8
PGSC0003DMG400026549 Solanum tuberosum HOM05D000717 ORTHO05D000555 4.0e-07 58.5 51 54.9
vmacro18117 Vaccinium macrocarpon HOM05D000717 ORTHO05D000555 4.0e-07 58.5 43 62.8
Solyc02g065680.3 Solanum lycopersicum HOM05D000717 ORTHO05D000555 5.2e-07 58.2 43 62.8
Sopen02g015900 Solanum pennellii HOM05D000717 ORTHO05D000555 5.2e-07 58.2 43 62.8
TPR.G15951 Trifolium pratense HOM05D000717 ORTHO05D000555 5.2e-07 58.2 42 69.0
TPR.G15958 Trifolium pratense HOM05D000717 ORTHO05D000555 5.2e-07 58.2 42 71.4
vmacro05602 Vaccinium macrocarpon HOM05D000717 ORTHO05D000555 5.2e-07 58.2 47 59.6
Actinidia17613 Actinidia chinensis HOM05D000717 ORTHO05D000555 6.8e-07 57.8 39 66.7
Actinidia36280 Actinidia chinensis HOM05D000717 ORTHO05D000555 6.8e-07 57.8 57 52.6
Thhalv10028319m.g Eutrema salsugineum HOM05D000717 ORTHO05D000555 6.8e-07 57.8 48 66.7
Manes.01G105000 Manihot esculenta HOM05D000717 ORTHO05D000555 6.8e-07 57.8 47 61.7
Medtr6g016245 Medicago truncatula HOM05D000717 ORTHO05D000555 6.8e-07 57.8 55 54.5
SHI33628 Sapria himalayana HOM05D000717 ORTHO05D000555 6.8e-07 57.8 40 75.0
Solyc02g089400.4 Solanum lycopersicum HOM05D000717 ORTHO05D000555 6.8e-07 57.8 58 51.7
ClCG07G016150 Citrullus lanatus HOM05D000717 ORTHO05D000555 8.9e-07 57.4 46 63.0
MELO3C008709.2 Cucumis melo HOM05D000717 ORTHO05D000555 8.9e-07 57.4 46 65.2
Oeu032841.1 Olea europaea HOM05D000717 ORTHO05D000555 8.9e-07 57.4 57 52.6
Actinidia18096 Actinidia chinensis HOM05D000717 ORTHO05D000555 1.2e-06 57.0 43 62.8
DCAR_010999 Daucus carota HOM05D000717 ORTHO05D000555 1.2e-06 57.0 51 52.9
Psat1g064280 Pisum sativum HOM05D000717 ORTHO05D000555 1.2e-06 57.0 55 56.4
Psat1g064360 Pisum sativum HOM05D000717 ORTHO05D000555 1.2e-06 57.0 39 71.8
VMungo0464G1796 Vigna mungo HOM05D000717 ORTHO05D000555 1.2e-06 57.0 53 54.7
CsaV3_2G009750 Cucumis sativus L. HOM05D000717 ORTHO05D000555 2.6e-06 55.8 46 63.0
Migut.E00259 Erythranthe guttata HOM05D000717 ORTHO05D000555 2.6e-06 55.8 45 66.7
Glyma.13G051100 Glycine max HOM05D000717 ORTHO05D000555 2.6e-06 55.8 43 67.4
MD16G1053900 Malus domestica HOM05D000717 ORTHO05D000555 2.6e-06 55.8 42 71.4
Zm00001eb387570 Zea mays HOM05D000717 ORTHO05D000555 2.6e-06 55.8 43 62.8
PSO017G0709 Papaver somniferum HOM05D000717 ORTHO05D000555 4.4e-06 55.1 52 55.8
PSO478G0971 Papaver somniferum HOM05D000717 ORTHO05D000555 4.4e-06 55.1 52 55.8
Sed0012305 Sechium edule HOM05D000717 ORTHO05D000555 4.4e-06 55.1 43 62.8
TWI32G0885 Tripterygium wilfordii HOM05D000717 ORTHO05D000555 4.4e-06 55.1 43 67.4
TWI34G0827 Tripterygium wilfordii HOM05D000717 ORTHO05D000555 4.4e-06 55.1 43 67.4
HPP92_018235 Vanilla planifolia HOM05D000717 ORTHO05D000555 4.4e-06 55.1 40 67.5
VMungo0464G0534 Vigna mungo HOM05D000717 ORTHO05D000555 4.4e-06 55.1 44 68.2
ATR0739G183 Amborella trichopoda HOM05D000717 ORTHO05D000555 5.7e-06 54.7 52 61.5
CSS0043484 Camellia sinensis var. sinensis HOM05D000717 ORTHO05D000555 5.7e-06 54.7 43 67.4
Lalb_Chr21g0318131 Lupinus albus HOM05D000717 ORTHO05D000555 5.7e-06 54.7 41 65.9
Medtr6g016270 Medicago truncatula HOM05D000717 ORTHO05D000555 5.7e-06 54.7 42 64.3
AL7G51620 Arabidopsis lyrata HOM05D000717 ORTHO05D000555 9.8e-06 53.9 40 70.0
AT5G38820 Arabidopsis thaliana HOM05D000717 ORTHO05D000555 9.8e-06 53.9 40 70.0
SEGI_00609 Sequoiadendron giganteum HOM05D000717 ORTHO05D000555 9.8e-06 53.9 41 65.9


User provided reference genes

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