Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 2.0e-46 188.7 94 100.0
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 2.0e-46 188.7 94 100.0
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 2.0e-46 188.7 94 100.0
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 1.3e-45 186.0 94 98.9
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 1.3e-45 186.0 94 98.9
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 1.0e-42 176.4 94 93.6
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 1.3e-42 176.0 94 93.6
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.3e-42 176.0 94 93.6
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 92.6
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 8.7e-42 173.3 94 91.5
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 2.5e-41 171.8 94 90.4
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 9.6e-41 169.9 94 89.4
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 9.6e-41 169.9 94 89.4
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 1.3e-40 169.5 94 89.4
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.0e-38 162.2 94 85.1
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.6e-38 161.8 94 85.1
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 5.8e-38 160.6 94 84.0
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 8.4e-37 156.8 94 80.9
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 3.2e-36 154.8 94 80.9
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 4.2e-36 154.5 94 79.8
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 78.7
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 79.8
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 7.1e-36 153.7 94 79.8
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.2e-35 152.9 94 79.8
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 1.6e-35 152.5 94 79.8
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.6e-35 152.5 94 78.7
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.1e-35 152.1 94 77.7
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.6e-35 151.0 94 77.7
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 4.6e-35 151.0 94 77.7
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 6.0e-35 150.6 94 77.7
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 7.9e-35 150.2 94 76.6
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 7.9e-35 150.2 94 77.7
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.8e-34 149.1 94 76.6
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 3.0e-34 148.3 94 75.5
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 3.0e-34 148.3 94 74.5
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 77.7
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 77.7
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 5.1e-34 147.5 94 75.5
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 6.7e-34 147.1 94 74.5
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 6.7e-34 147.1 94 75.5
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 6.7e-34 147.1 94 77.7
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 8.7e-34 146.7 94 75.5
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 8.7e-34 146.7 94 76.6
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 1.1e-33 146.4 94 75.5
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 1.1e-33 146.4 94 75.5
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 1.1e-33 146.4 93 74.2
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 1.1e-33 146.4 93 74.2
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 76.6
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 75.5
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 1.5e-33 146.0 93 76.3
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 76.6
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 75.5
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 75.5
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 75.5
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 76.6
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 76.6
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 1.9e-33 145.6 94 76.6
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.5e-33 145.2 94 74.5
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.5e-33 145.2 94 75.5
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 74.5
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 3.3e-33 144.8 93 74.2
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 3.3e-33 144.8 94 75.5
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 4.3e-33 144.4 94 75.5
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 4.3e-33 144.4 94 75.5
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 4.3e-33 144.4 94 75.5
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 5.6e-33 144.1 94 74.5
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 7.4e-33 143.7 94 75.5
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 7.4e-33 143.7 94 74.5
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 7.4e-33 143.7 94 75.5
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 9.6e-33 143.3 94 74.5
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 9.6e-33 143.3 94 73.4
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 9.6e-33 143.3 93 73.1
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 1.3e-32 142.9 94 75.5
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 74.5
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 75.5
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 73.4
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 73.4
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 74.5
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 1.6e-32 142.5 96 75.0
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 1.6e-32 142.5 94 75.5
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 1.6e-32 142.5 93 72.0
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 2.8e-32 141.7 94 73.4
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.8e-32 141.7 94 73.4
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 3.7e-32 141.4 93 72.0
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 4.8e-32 141.0 94 72.3
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 6.2e-32 140.6 95 73.7
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 6.2e-32 140.6 94 73.4
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 6.2e-32 140.6 93 71.0
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 6.2e-32 140.6 93 71.0
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 6.2e-32 140.6 93 71.0
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 6.2e-32 140.6 94 73.4
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 8.1e-32 140.2 94 73.4
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 8.1e-32 140.2 94 73.4
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 8.1e-32 140.2 94 73.4
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 8.1e-32 140.2 94 71.3
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.1e-31 139.8 94 72.3
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 1.1e-31 139.8 90 75.6
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 1.1e-31 139.8 95 73.7
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.1e-31 139.8 94 72.3
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 1.4e-31 139.4 94 72.3
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 2.4e-31 138.7 94 71.3
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 5.3e-31 137.5 94 69.1
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 6.9e-31 137.1 90 73.3
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 6.9e-31 137.1 94 71.3
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 1.2e-30 136.3 94 73.4
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 1.2e-30 136.3 94 74.5
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 1.5e-30 136.0 91 71.4
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.0e-30 135.6 94 69.1
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 9.9e-30 133.3 93 68.8
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.2e-29 132.1 95 68.4
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.2e-29 132.1 95 68.4
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 1.1e-28 129.8 95 67.4
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 1.4e-28 129.4 89 69.7
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 1.9e-28 129.0 87 71.3
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 1.9e-28 129.0 88 71.6
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 2.5e-28 128.6 117 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 3.2e-28 128.3 88 69.3
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 5.5e-28 127.5 84 75.0
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 7.1e-28 127.1 81 76.5
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 9.3e-28 126.7 89 66.3
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 7.9e-27 123.6 91 62.6
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 7.9e-27 123.6 91 62.6
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 7.9e-27 123.6 88 67.0
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.3e-26 122.9 91 62.6
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 1.3e-26 122.9 93 65.6
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 3.0e-26 121.7 93 60.2
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 3.9e-26 121.3 81 69.1
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 3.9e-26 121.3 91 61.5
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 2.5e-25 118.6 93 57.0
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 3.3e-25 118.2 93 59.1
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 4.3e-25 117.9 94 62.8
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.3e-24 116.3 150 46.0
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 2.8e-24 115.2 76 76.3
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 3.7e-24 114.8 87 60.9
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 8.2e-24 113.6 92 58.7
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 8.2e-24 113.6 158 43.0
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 1.2e-22 109.8 76 72.4
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 1.5e-22 109.4 96 56.2
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.5e-22 109.4 93 52.7
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 2.6e-22 108.6 63 82.5
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 3.4e-22 108.2 62 82.3
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.5e-22 107.8 83 63.9
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 4.5e-22 107.8 69 75.4
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 4.5e-22 107.8 93 58.1
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 5.8e-22 107.5 63 79.4
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 7.6e-22 107.1 62 82.3
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 6.5e-21 104.0 93 48.4
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 1.6e-19 99.4 84 57.1
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 1.6e-19 99.4 84 57.1
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 1.8e-18 95.9 86 57.0
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 2.3e-18 95.5 102 52.9
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 3.9e-18 94.7 67 67.2
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 1.9e-17 92.4 80 52.5
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 2.2e-16 89.0 94 53.2
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 3.8e-13 78.2 71 54.9
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.7e-11 72.0 70 48.6
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 5.1e-10 67.8 93 37.6


User provided reference genes

Program Settings