Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10501 Brassica carinata HOM05D006957 ORTHO05D008647 2.2e-151 538.9 266 100.0
C04p28180 Brassica napus HOM05D006957 ORTHO05D008647 2.2e-151 538.9 266 100.0
BolC4t24361H Brassica oleracea HOM05D006957 ORTHO05D008647 2.2e-151 538.9 266 100.0
BolC4t24891H Brassica oleracea HOM05D006957 ORTHO05D008647 1.2e-144 516.5 266 97.0
BcaC06g31885 Brassica carinata HOM05D006957 ORTHO05D008647 2.5e-142 508.8 266 94.0
Sp2g02390 Schrenkiella parvula HOM05D006957 ORTHO05D008647 1.5e-126 456.4 267 85.8
BcaC02g10063 Brassica carinata HOM05D006957 ORTHO05D008647 2.3e-124 449.1 266 86.8
A03p67500 Brassica napus HOM05D006957 ORTHO05D008647 2.0e-123 446.0 259 86.9
BraA01t02718Z Brassica rapa HOM05D006957 ORTHO05D008647 5.7e-123 444.5 259 86.5
Carub.0002s0276 Capsella rubella HOM05D006957 ORTHO05D008647 7.7e-120 434.1 266 82.7
Thhalv10023639m.g Eutrema salsugineum HOM05D006957 ORTHO05D008647 2.2e-119 432.6 269 81.8
AL2G13680 Arabidopsis lyrata HOM05D006957 ORTHO05D008647 5.0e-119 431.4 269 82.5
AT1G62250 Arabidopsis thaliana HOM05D006957 ORTHO05D008647 2.7e-117 425.6 269 81.4
C04p33270 Brassica napus HOM05D006957 ORTHO05D008647 1.9e-110 402.9 207 95.7
THA.LOC104818712 Tarenaya hassleriana HOM05D006957 ORTHO05D008647 2.3e-95 352.8 270 70.7
Thecc.06G223400 Theobroma cacao HOM05D006957 ORTHO05D008647 1.6e-85 320.1 277 63.9
Gohir.A06G149100 Gossypium hirsutum HOM05D006957 ORTHO05D008647 8.1e-85 317.8 279 64.2
COL.COLO4_31796 Corchorus olitorius HOM05D006957 ORTHO05D008647 1.1e-84 317.4 272 63.2
CSS0002589 Camellia sinensis var. sinensis HOM05D006957 ORTHO05D008647 2.3e-84 316.2 278 62.6
Dinv13912 Davidia involucrata HOM05D006957 ORTHO05D008647 2.3e-84 316.2 280 62.9
RcHm_v2.0_Chr5g0077361 Rosa chinensis HOM05D006957 ORTHO05D008647 3.1e-84 315.8 225 72.0
Atru.chr10.2253 Acer truncatum HOM05D006957 ORTHO05D008647 4.0e-84 315.5 238 69.3
Gohir.D06G155200 Gossypium hirsutum HOM05D006957 ORTHO05D008647 6.8e-84 314.7 208 77.4
ClCG01G021850 Citrullus lanatus HOM05D006957 ORTHO05D008647 8.9e-84 314.3 282 62.1
Ciclev10016210m.g Citrus clementina HOM05D006957 ORTHO05D008647 8.9e-84 314.3 289 62.6
Prupe.6G022000 Prunus persica HOM05D006957 ORTHO05D008647 1.2e-83 313.9 245 67.8
MELO3C007402.2 Cucumis melo HOM05D006957 ORTHO05D008647 1.5e-83 313.5 283 62.2
GSVIVG01012704001 Vitis vinifera HOM05D006957 ORTHO05D008647 1.5e-83 313.5 201 77.1
FvH4_3g43300 Fragaria vesca HOM05D006957 ORTHO05D008647 3.4e-83 312.4 225 72.0
Sed0022215 Sechium edule HOM05D006957 ORTHO05D008647 4.4e-83 312.0 239 68.2
CsaV3_6G048910 Cucumis sativus L. HOM05D006957 ORTHO05D008647 5.8e-83 311.6 284 62.0
Migut.M01335 Erythranthe guttata HOM05D006957 ORTHO05D008647 5.8e-83 311.6 201 76.6
SalBow8G2851 Salvia bowleyana HOM05D006957 ORTHO05D008647 1.3e-82 310.5 262 63.7
Manes.17G025800 Manihot esculenta HOM05D006957 ORTHO05D008647 1.7e-82 310.1 208 76.0
arahy.Tifrunner.gnm1.ann1.VHEB9D Arachis hypogaea HOM05D006957 ORTHO05D008647 2.2e-82 309.7 276 62.3
Potri.011G006700 Populus trichocarpa HOM05D006957 ORTHO05D008647 2.2e-82 309.7 230 68.3
CANSAT56G0113 Cannabis sativa HOM05D006957 ORTHO05D008647 2.9e-82 309.3 238 69.3
TWI38G1647 Tripterygium wilfordii HOM05D006957 ORTHO05D008647 2.9e-82 309.3 279 61.6
arahy.Tifrunner.gnm1.ann1.SK97UM Arachis hypogaea HOM05D006957 ORTHO05D008647 4.9e-82 308.5 276 62.0
Lj1A1232T100 Lonicera japonica HOM05D006957 ORTHO05D008647 1.4e-81 307.0 281 60.1
vmacro15796 Vaccinium macrocarpon HOM05D006957 ORTHO05D008647 1.4e-81 307.0 201 75.6
FAN25G2833 Fragaria x ananassa HOM05D006957 ORTHO05D008647 1.9e-81 306.6 240 68.8
Lj4g0000977 Lotus japonicus HOM05D006957 ORTHO05D008647 1.9e-81 306.6 224 69.6
QL05p072698 Quercus lobata HOM05D006957 ORTHO05D008647 1.9e-81 306.6 280 59.6
Glyma.07G262000 Glycine max HOM05D006957 ORTHO05D008647 2.4e-81 306.2 189 79.4
MD11G1027900 Malus domestica HOM05D006957 ORTHO05D008647 2.4e-81 306.2 220 70.5
PGR042G2408 Punica granatum HOM05D006957 ORTHO05D008647 3.2e-81 305.8 201 75.6
CAN.G1014.10 Capsicum annuum HOM05D006957 ORTHO05D008647 4.1e-81 305.4 196 75.5
Cc09_g01500 Coffea canephora HOM05D006957 ORTHO05D008647 4.1e-81 305.4 285 56.8
FAN21G2957 Fragaria x ananassa HOM05D006957 ORTHO05D008647 4.1e-81 305.4 240 68.8
FAN16G3059 Fragaria x ananassa HOM05D006957 ORTHO05D008647 9.2e-81 304.3 233 69.1
Glyma.17G012100 Glycine max HOM05D006957 ORTHO05D008647 9.2e-81 304.3 189 79.4
MBI18_g04903_MAGBIO Magnolia biondii HOM05D006957 ORTHO05D008647 9.2e-81 304.3 189 79.9
Solyc02g080780.3 Solanum lycopersicum HOM05D006957 ORTHO05D008647 9.2e-81 304.3 196 75.5
Sopen02g025470 Solanum pennellii HOM05D006957 ORTHO05D008647 1.2e-80 303.9 196 75.5
MSTRG.7198 Avicennia marina HOM05D006957 ORTHO05D008647 2.1e-80 303.1 201 75.1
Nitab4.5_0007963g0030 Nicotiana tabacum HOM05D006957 ORTHO05D008647 2.1e-80 303.1 196 76.0
FAN11G3374 Fragaria x ananassa HOM05D006957 ORTHO05D008647 2.7e-80 302.8 240 67.9
Cfa000203 Carpinus fangiana HOM05D006957 ORTHO05D008647 3.5e-80 302.4 203 73.4
VMungo1215G0309 Vigna mungo HOM05D006957 ORTHO05D008647 3.5e-80 302.4 189 78.3
Lalb_Chr07g0177131 Lupinus albus HOM05D006957 ORTHO05D008647 7.8e-80 301.2 187 79.1
AUR62012727 Chenopodium quinoa HOM05D006957 ORTHO05D008647 1.0e-79 300.8 201 75.6
AUR62021927 Chenopodium quinoa HOM05D006957 ORTHO05D008647 1.0e-79 300.8 201 75.6
Eucgr.L02772 Eucalyptus grandis HOM05D006957 ORTHO05D008647 1.3e-79 300.4 251 64.1
Duzib160G0853 Durio zibethinus HOM05D006957 ORTHO05D008647 1.7e-79 300.1 281 61.6
ECA234G3681 Erigeron canadensis HOM05D006957 ORTHO05D008647 1.7e-79 300.1 230 67.4
EL10Ac8g20084 Beta vulgaris HOM05D006957 ORTHO05D008647 2.3e-79 299.7 201 74.6
Nitab4.5_0002695g0060 Nicotiana tabacum HOM05D006957 ORTHO05D008647 3.0e-79 299.3 196 74.5
Lsat_1_v5_gn_4_59280 Lactuca sativa HOM05D006957 ORTHO05D008647 3.9e-79 298.9 190 76.8
Eucgr.E03906 Eucalyptus grandis HOM05D006957 ORTHO05D008647 5.1e-79 298.5 251 64.5
Aqoxy4G01856 Aquilegia oxysepala HOM05D006957 ORTHO05D008647 6.6e-79 298.1 231 65.8
HanXRQChr16g0515501 Helianthus annuus HOM05D006957 ORTHO05D008647 1.1e-78 297.4 192 76.0
Gorai.010G181400 Gossypium raimondii HOM05D006957 ORTHO05D008647 1.5e-78 297.0 199 76.9
Peaxi162Scf00178g01715 Petunia axillaris HOM05D006957 ORTHO05D008647 7.3e-78 294.7 191 75.4
PSO832G3220 Papaver somniferum HOM05D006957 ORTHO05D008647 9.5e-78 294.3 201 73.6
SGA_v2.0_scaffold4G01906 Striga asiatica HOM05D006957 ORTHO05D008647 2.8e-77 292.7 201 72.6
Phvul.003G080300 Phaseolus vulgaris HOM05D006957 ORTHO05D008647 3.6e-77 292.4 189 76.7
Medtr4g132350 Medicago truncatula HOM05D006957 ORTHO05D008647 4.7e-77 292.0 220 67.7
Rhsim02G0105900 Rhododendron simsii HOM05D006957 ORTHO05D008647 4.7e-77 292.0 276 59.8
Psat4g006040 Pisum sativum HOM05D006957 ORTHO05D008647 1.1e-76 290.8 232 65.1
Sabra04G0005100 Salix brachista HOM05D006957 ORTHO05D008647 1.1e-76 290.8 186 76.9
Haze_06820 Corylus avellana HOM05D006957 ORTHO05D008647 1.4e-76 290.4 230 67.0
TPR.G29296 Trifolium pratense HOM05D006957 ORTHO05D008647 1.4e-76 290.4 189 72.5
QL02p099916 Quercus lobata HOM05D006957 ORTHO05D008647 2.4e-76 289.7 183 74.9
TAR629G0592 Trochodendron aralioides HOM05D006957 ORTHO05D008647 4.0e-76 288.9 192 76.0
PGSC0003DMG400016446 Solanum tuberosum HOM05D006957 ORTHO05D008647 6.8e-76 288.1 191 74.3
Hund21421 Selenicereus undatus HOM05D006957 ORTHO05D008647 5.8e-75 285.0 285 55.8
Duzib192G0359 Durio zibethinus HOM05D006957 ORTHO05D008647 9.9e-75 284.3 191 74.9
Os03g0744700 Oryza sativa ssp. japonica HOM05D006957 ORTHO05D008647 2.9e-74 282.7 200 70.5
DCAR_028192 Daucus carota HOM05D006957 ORTHO05D008647 1.1e-73 280.8 272 57.0
Actinidia11860 Actinidia chinensis HOM05D006957 ORTHO05D008647 4.1e-73 278.9 284 56.0
unitig_748.g7953 Utricularia gibba HOM05D006957 ORTHO05D008647 4.1e-73 278.9 220 64.1
ATR0794G153 Amborella trichopoda HOM05D006957 ORTHO05D008647 5.4e-73 278.5 220 65.0
Ca_21073_v3 Cicer arietinum L. HOM05D006957 ORTHO05D008647 3.0e-71 272.7 183 73.2
Zm00001eb056950 Zea mays HOM05D006957 ORTHO05D008647 3.3e-70 269.2 187 71.1
Ah.09g234750 Amaranthus hybridus HOM05D006957 ORTHO05D008647 7.3e-70 268.1 195 66.7
CDE05G2181 Ceratophyllum demersum HOM05D006957 ORTHO05D008647 2.4e-68 263.1 191 67.0
Nn1g07184 Nelumbo nucifera HOM05D006957 ORTHO05D008647 2.9e-66 256.1 189 68.8
Mapoly0071s0090 Marchantia polymorpha HOM05D006957 ORTHO05D008647 4.0e-60 235.7 189 61.4
CiPaw.09G093600 Carya illinoinensis HOM05D006957 ORTHO05D008647 8.4e-58 228.0 190 63.7
Pp3c10_11430 Physcomitrium patens HOM05D006957 ORTHO05D008647 1.1e-57 227.6 189 59.3
Sc05g0009300 Simmondsia chinensis HOM05D006957 ORTHO05D008647 2.4e-57 226.5 163 69.3
CiPaw.10G072800 Carya illinoinensis HOM05D006957 ORTHO05D008647 1.6e-48 197.2 121 78.5
SMO347G0662 Selaginella moellendorffii HOM05D006957 ORTHO05D008647 3.9e-47 192.6 190 52.1
Oeu051204.1 Olea europaea HOM05D006957 ORTHO05D008647 2.4e-44 183.3 103 81.6
TAR627G0415 Trochodendron aralioides HOM05D006957 ORTHO05D008647 1.5e-22 110.9 81 70.4
arahy.Tifrunner.gnm1.ann1.EAEB6D Arachis hypogaea HOM05D006957 ORTHO05D008647 4.4e-22 109.4 103 57.3
SEGI_02842 Sequoiadendron giganteum HOM05D006957 ORTHO05D008647 1.1e-17 94.7 88 54.5
Dinv20064 Davidia involucrata HOM05D006957 ORTHO05D008647 2.5e-17 93.6 157 38.9
Cre02.g141850 Chlamydomonas reinhardtii HOM05D006957 ORTHO05D008647 6.1e-16 89.0 151 34.4
CiPaw.10G072900 Carya illinoinensis HOM05D006957 ORTHO05D008647 3.1e-12 76.6 67 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4491 Anthoceros agrestis HOM05D006957 ORTHO05D008647 5.0e-10 69.3 85 44.7
PRCOL_00005158 Prasinoderma coloniale HOM05D006957 ORTHO05D008647 2.5e-09 67.0 205 29.3
Cpa.g.sc1199.4 Carica papaya HOM05D006957 ORTHO05D008647 3.2e-09 66.6 35 94.3


User provided reference genes

Program Settings