Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 2.2e-58 228.8 121 100.0
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 2.2e-58 228.8 121 100.0
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 2.2e-58 228.8 121 100.0
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 6.6e-34 147.5 127 68.5
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.7e-27 125.6 134 56.0
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 1.5e-22 109.8 127 55.1
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 2.9e-21 105.5 112 57.1
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 1.1e-17 93.6 100 58.0
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 1.1e-17 93.6 100 58.0
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 3.3e-17 92.0 129 51.2
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.2e-16 90.1 127 47.2
Thhalv10023811m.g Eutrema salsugineum HOM05D012662 ORTHO05D008751 1.4e-15 86.7 126 48.4
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.8e-15 86.3 131 47.3
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.8e-15 86.3 131 47.3
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 1.8e-15 86.3 131 47.3
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 1.8e-15 86.3 132 50.0
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.3e-15 85.9 141 44.0
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 3.1e-15 85.5 131 44.3
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 5.2e-15 84.7 135 45.9
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 8.9e-15 84.0 125 45.6
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 1.2e-14 83.6 133 45.1
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.2e-14 83.6 133 45.1
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 1.2e-14 83.6 122 45.9
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.5e-14 83.2 128 49.2
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 2.0e-14 82.8 128 41.4
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 2.6e-14 82.4 128 41.4
CARHR053990 Cardamine hirsuta HOM05D012662 ORTHO05D008751 2.6e-14 82.4 126 47.6
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 2.6e-14 82.4 135 43.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 4.4e-14 81.6 135 45.2
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 4.4e-14 81.6 118 51.7
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 4.4e-14 81.6 126 48.4
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 5.8e-14 81.3 128 44.5
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 9.8e-14 80.5 128 47.7
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 9.8e-14 80.5 121 43.8
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 1.3e-13 80.1 121 44.6
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 1.3e-13 80.1 121 43.8
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.7e-13 79.7 121 48.8
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.9e-13 79.0 126 46.0
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 3.7e-13 78.6 123 43.9
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.7e-13 78.6 131 42.7
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 4.9e-13 78.2 128 41.4
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 6.4e-13 77.8 120 41.7
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 6.4e-13 77.8 120 41.7
BcaC07g37418 Brassica carinata HOM05D012662 ORTHO05D008751 8.3e-13 77.4 87 57.5
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 8.3e-13 77.4 136 40.4
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 1.1e-12 77.0 122 41.8
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.1e-12 77.0 128 43.0
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.9e-12 76.3 114 46.5
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.9e-12 76.3 126 42.9
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 1.9e-12 76.3 119 45.4
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.4e-12 75.9 143 39.9
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 2.4e-12 75.9 124 43.5
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.2e-12 75.5 133 41.4
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 3.2e-12 75.5 135 42.2
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 4.1e-12 75.1 126 44.4
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 4.1e-12 75.1 99 49.5
AT1G58070 Arabidopsis thaliana HOM05D012662 ORTHO05D008751 5.4e-12 74.7 117 45.3
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 5.4e-12 74.7 125 45.6
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 9.2e-12 73.9 132 43.2
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 9.2e-12 73.9 93 46.2
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 1.2e-11 73.6 127 40.9
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 1.2e-11 73.6 143 39.9
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 1.6e-11 73.2 104 46.2
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 2.1e-11 72.8 114 49.1
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 2.7e-11 72.4 132 41.7
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.7e-11 72.4 127 43.3
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.3e-10 70.1 146 36.3
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 2.3e-10 69.3 130 40.0
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 3.0e-10 68.9 100 46.0
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 3.9e-10 68.6 78 52.6
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 3.9e-10 68.6 135 40.0
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 6.6e-10 67.8 132 37.9
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 6.6e-10 67.8 61 59.0
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 6.6e-10 67.8 122 38.5
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 6.6e-10 67.8 121 41.3
BcaB05g22043 Brassica carinata HOM05D007616 ORTHO05D008751 1.9e-09 66.2 76 53.9
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 3.3e-09 65.5 112 42.9
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 4.3e-09 65.1 127 37.0
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 5.6e-09 64.7 123 39.8
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 5.6e-09 64.7 91 46.2
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 6.2e-08 61.2 58 56.9
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 8.1e-08 60.8 99 47.5
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.1e-07 60.5 133 38.3
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 1.1e-07 60.5 119 35.3
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 6.8e-07 57.8 73 49.3
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 2.6e-06 55.8 112 38.4
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 2.6e-06 55.8 112 38.4
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 2.6e-06 55.8 112 38.4
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 4.4e-06 55.1 51 54.9
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 7.6e-06 54.3 99 43.4


User provided reference genes

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