Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 4.8e-30 133.7 59 100.0
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 4.8e-30 133.7 59 100.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.4e-26 122.1 58 89.7
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 8.2e-22 106.3 49 91.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.4e-21 105.5 49 89.8
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.1e-21 104.0 49 87.8
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 4.1e-21 104.0 49 87.8
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 4.1e-21 104.0 49 87.8
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 6.9e-21 103.2 49 87.8
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 6.9e-21 103.2 49 87.8
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.5e-20 102.1 49 85.7
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.5e-20 102.1 49 85.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.5e-20 102.1 49 85.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.5e-20 102.1 49 85.7
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.6e-20 101.3 49 85.7
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 4.5e-20 100.5 49 87.8
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 5.9e-20 100.1 49 85.7
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.0e-19 99.4 48 87.5
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 1.0e-19 99.4 49 85.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.0e-19 99.4 49 85.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 1.0e-19 99.4 49 85.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 1.0e-19 99.4 49 85.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.3e-19 99.0 49 85.7
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.4e-18 95.5 48 81.2
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.9e-18 95.1 48 79.2
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.9e-18 95.1 49 79.6
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.9e-18 95.1 49 79.6
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.5e-18 94.7 48 79.2
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.5e-18 94.7 49 79.6
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 2.5e-18 94.7 49 77.6
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.5e-18 94.7 49 77.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 3.2e-18 94.4 49 81.6
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 3.2e-18 94.4 48 79.2
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.2e-18 94.4 48 79.2
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 3.2e-18 94.4 54 68.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 3.2e-18 94.4 48 79.2
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 79.6
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 79.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 79.6
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 79.6
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 75.5
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 79.6
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 75.5
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 75.5
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 4.2e-18 94.0 49 75.5
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.2e-18 94.0 48 79.2
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 4.2e-18 94.0 54 72.2
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 5.5e-18 93.6 49 79.6
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 5.5e-18 93.6 49 79.6
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 5.5e-18 93.6 48 81.2
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.5e-18 93.6 49 77.6
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 5.5e-18 93.6 48 81.2
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.5e-18 93.6 49 77.6
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 7.2e-18 93.2 49 77.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 7.2e-18 93.2 48 77.1
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 7.2e-18 93.2 51 72.5
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 75.5
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 79.6
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 75.5
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 75.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 77.6
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 9.4e-18 92.8 49 77.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.2e-17 92.4 57 66.7
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.2e-17 92.4 48 77.1
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.2e-17 92.4 48 77.1
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-17 92.4 49 77.6
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 1.2e-17 92.4 49 75.5
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.2e-17 92.4 48 77.1
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.2e-17 92.4 49 75.5
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.6e-17 92.0 49 73.5
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.6e-17 92.0 49 75.5
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.6e-17 92.0 49 73.5
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.6e-17 92.0 48 77.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.6e-17 92.0 48 75.0
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.1e-17 91.7 49 75.5
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.1e-17 91.7 48 77.1
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 2.1e-17 91.7 49 77.6
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 2.1e-17 91.7 49 77.6
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 2.1e-17 91.7 49 77.6
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.7e-17 91.3 49 75.5
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.7e-17 91.3 49 75.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.7e-17 91.3 49 75.5
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 4.6e-17 90.5 48 75.0
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 6.1e-17 90.1 48 72.9
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 6.1e-17 90.1 48 72.9
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 71.4
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 71.4
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 6.1e-17 90.1 49 73.5
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 7.9e-17 89.7 48 77.1
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.0e-16 89.4 48 77.1
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.0e-16 89.4 49 73.5
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 1.8e-16 88.6 49 73.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 3.0e-16 87.8 49 73.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 8.8e-16 86.3 49 71.4
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-15 85.9 54 66.7
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.5e-15 84.7 49 73.5
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.5e-15 84.7 49 73.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.4e-15 83.2 49 73.5
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.4e-15 83.2 49 73.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.8e-14 81.3 63 57.1
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 4.1e-13 77.4 44 72.7
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.0e-12 75.1 48 60.4
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.4e-12 74.3 49 65.3
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 4.5e-12 73.9 38 78.9
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.0e-11 72.8 38 73.7
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 2.2e-11 71.6 38 76.3
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 3.8e-11 70.9 42 71.4
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.8e-11 70.9 38 73.7
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 3.2e-10 67.8 35 74.3
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 5.5e-10 67.0 45 60.0
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 5.5e-10 67.0 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 7.2e-10 66.6 53 49.1
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.4e-10 66.2 40 72.5
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-09 65.9 37 67.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.2e-09 65.9 40 70.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.6e-09 65.5 37 67.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 2.1e-09 65.1 39 64.1
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 2.7e-09 64.7 35 71.4
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.7e-09 63.9 35 68.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.7e-09 63.9 36 69.4
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 4.7e-09 63.9 36 66.7
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 4.7e-09 63.9 37 64.9
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 7.9e-09 63.2 35 71.4
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 5.1e-08 60.5 34 70.6
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.3e-07 57.8 36 61.1
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 9.7e-07 56.2 36 63.9


User provided reference genes

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