Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-98 362.1 185 100.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 4.4e-98 361.3 185 99.5
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-74 283.1 183 82.5
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.5e-34 148.7 204 50.0
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.5e-34 148.7 204 50.0
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-33 146.7 204 49.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.7e-33 146.7 204 49.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 8.5e-33 144.4 203 50.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 4.7e-31 138.7 204 47.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 7.9e-31 137.9 204 48.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.8e-28 129.4 204 44.6
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.8e-28 128.6 204 44.6
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.4e-27 126.3 203 44.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.1e-27 125.9 201 44.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.2e-26 124.0 205 43.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.0e-26 123.2 203 44.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.5e-26 122.5 203 43.8
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.7e-25 120.2 203 43.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 5.5e-24 115.2 202 42.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.3e-22 109.8 204 40.2
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.0e-21 106.7 210 38.6
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.2e-20 103.2 202 35.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.7e-20 102.4 201 37.8
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 4.8e-20 102.1 201 37.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 4.8e-20 102.1 201 37.3
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.8e-19 100.1 221 34.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.4e-19 99.8 204 36.3
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 9.1e-19 97.8 203 36.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.6e-18 97.1 205 35.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.7e-18 96.3 59 86.4
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 2.7e-18 96.3 205 35.6
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.7e-18 96.3 201 34.8
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.7e-18 96.3 203 36.0
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.5e-18 95.9 120 53.3
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 3.5e-18 95.9 205 35.1
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 5.9e-18 95.1 202 34.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.0e-17 94.4 202 36.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.0e-17 94.4 205 35.6
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.0e-17 94.4 204 34.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.7e-17 93.6 203 34.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.7e-17 93.6 204 34.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.7e-17 93.6 205 35.1
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-17 93.2 154 40.3
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.2e-17 93.2 205 35.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.9e-17 92.8 204 34.8
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.9e-17 92.8 205 34.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.8e-17 92.4 211 32.7
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 8.5e-17 91.3 203 35.5
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 8.5e-17 91.3 209 33.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-16 90.9 208 33.2
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-16 90.9 208 33.2
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.5e-16 90.5 209 34.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 3.2e-16 89.4 201 33.3
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.2e-16 89.4 211 32.7
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 7.2e-16 88.2 203 34.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.4e-16 87.8 207 31.9
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.2e-15 87.4 203 32.5
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-15 86.7 209 33.0
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.1e-15 86.7 220 31.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.7e-15 86.3 210 32.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 2.7e-15 86.3 203 32.0
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.6e-15 85.9 212 32.1
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.1e-15 85.1 203 31.5
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.1e-15 85.1 206 31.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.0e-14 84.3 198 31.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.4e-14 84.0 205 32.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.8e-14 83.6 209 31.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 3.0e-14 82.8 205 31.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.0e-14 82.8 201 31.3
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.0e-14 82.4 67 71.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 4.0e-14 82.4 207 30.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 4.0e-14 82.4 206 31.6
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.0e-14 82.4 213 30.5
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 5.2e-14 82.0 211 30.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 8.8e-14 81.3 221 31.2
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-13 80.5 203 31.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.4e-13 79.0 214 30.4
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.7e-13 78.6 208 30.3
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.7e-13 78.6 220 29.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 7.5e-13 78.2 209 29.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 9.8e-13 77.8 202 32.2
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-12 77.4 220 28.2
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.2e-12 76.6 208 29.8
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.8e-12 76.3 211 29.4
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-12 76.3 203 30.0
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.7e-12 75.9 206 31.6
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 8.3e-12 74.7 206 31.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.1e-11 74.3 217 28.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.4e-11 73.9 200 31.0
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.4e-11 73.2 213 28.2
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.1e-11 72.8 206 31.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.1e-11 72.8 62 58.1
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.1e-11 72.8 233 27.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.1e-11 72.4 212 28.3
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-10 70.9 203 30.5
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-10 70.9 203 30.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.2e-10 70.9 62 58.1
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-10 70.9 176 33.5
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.6e-10 70.5 62 56.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.6e-10 70.5 219 28.3
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 2.0e-10 70.1 203 29.1
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.5e-10 69.3 203 30.5
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 3.5e-10 69.3 234 27.4
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 4.5e-10 68.9 205 27.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.9e-10 68.6 100 44.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 7.7e-10 68.2 66 56.1
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 7.7e-10 68.2 64 57.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.7e-09 67.0 83 49.4
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.7e-09 67.0 204 29.9
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.9e-09 66.2 66 51.5
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.9e-09 66.2 62 53.2
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 3.8e-09 65.9 112 39.3
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 5.0e-09 65.5 203 31.0
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.0e-09 65.5 63 57.1
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.0e-09 65.5 63 57.1
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.0e-09 65.5 103 41.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.5e-09 65.1 201 27.4
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.1e-08 64.3 66 54.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-08 64.3 204 29.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.1e-08 64.3 89 43.8
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.5e-08 63.9 61 52.5
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.5e-08 63.2 58 53.4
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.2e-08 62.8 203 28.1
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.2e-08 62.4 59 54.2
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 7.2e-08 61.6 105 40.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.2e-07 60.8 60 51.7
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.2e-07 60.8 68 51.5
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-07 60.5 181 32.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.6e-07 60.5 60 53.3
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.1e-07 60.1 221 25.8
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.8e-07 59.7 204 27.9
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.8e-07 59.7 66 51.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.8e-07 59.7 121 40.5
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.8e-06 57.0 97 41.2
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.8e-06 57.0 117 36.8
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.0e-06 55.8 98 39.8
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.0e-06 55.8 60 46.7
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.8e-06 55.1 78 39.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.8e-06 54.7 63 47.6


User provided reference genes

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