Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 0.0e+00 1142.1 616 100.0
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1142.1 616 100.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1140.6 616 99.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.3e-308 1061.6 620 93.4
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 9.3e-302 1039.6 624 92.3
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 9.6e-299 1029.6 623 90.9
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 9.6e-299 1029.6 623 90.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.7e-298 1027.7 630 90.2
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.5e-288 995.7 626 88.8
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-287 992.3 622 87.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.7e-287 992.3 622 87.9
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.6e-285 985.7 616 88.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 7.9e-285 983.4 624 88.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.5e-275 951.8 624 86.1
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 5.5e-262 907.5 560 89.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.1e-241 838.2 586 80.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.3e-236 822.4 613 75.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 7.5e-235 817.4 423 100.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.5e-211 740.0 673 64.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 6.4e-210 734.6 664 64.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.1e-209 733.8 667 64.8
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.7e-208 729.2 666 64.9
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.7e-208 729.2 666 64.9
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.7e-208 729.2 640 66.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 4.6e-208 728.4 674 63.5
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.0e-207 727.2 622 67.4
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.3e-207 726.9 673 63.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.3e-207 726.1 635 66.6
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 3.9e-207 725.3 672 63.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.1e-206 723.8 676 63.9
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-206 723.4 668 64.5
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 5.6e-206 721.5 654 65.1
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 7.3e-206 721.1 678 63.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.1e-205 719.5 673 61.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.1e-205 719.5 695 62.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.8e-205 719.2 655 65.3
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 3.6e-205 718.8 667 64.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 8.1e-205 717.6 670 63.6
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.1e-204 717.2 653 64.9
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.4e-204 716.8 519 76.1
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.8e-204 716.5 669 64.0
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.4e-204 716.1 670 63.9
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.1e-204 715.7 661 64.9
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.7e-202 709.9 695 59.9
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.4e-201 706.8 670 64.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.4e-201 706.8 662 62.5
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.2e-201 705.7 634 64.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.0e-199 699.1 667 62.4
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 3.9e-199 698.7 662 62.8
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 4.3e-198 695.3 653 62.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 9.6e-198 694.1 657 63.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.6e-197 693.3 664 62.3
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 3.6e-197 692.2 637 65.3
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.8e-196 689.9 564 69.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 3.1e-196 689.1 672 62.1
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.0e-196 687.6 635 63.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.4e-195 685.6 676 62.4
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-194 683.3 728 59.1
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.7e-194 683.3 553 70.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.9e-194 681.8 677 61.2
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 8.4e-194 681.0 673 62.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.1e-193 680.6 643 64.4
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.6e-192 676.8 669 62.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.7e-191 673.3 603 65.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.3e-191 672.9 596 66.1
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.3e-191 672.9 677 61.0
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.0e-191 672.5 569 68.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 2.5e-190 669.5 663 60.8
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.6e-189 666.8 675 60.9
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 4.0e-188 662.1 624 63.0
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-188 661.8 617 63.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 5.3e-188 661.8 647 62.8
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.9e-188 661.4 669 60.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.9e-186 656.0 669 60.7
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 4.9e-186 655.2 795 54.6
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 8.4e-186 654.4 632 61.9
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 3.2e-185 652.5 670 58.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.6e-184 650.2 638 61.4
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.7e-184 649.4 559 68.0
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 7.9e-184 647.9 635 61.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 3.9e-183 645.6 683 57.5
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.1e-183 645.2 639 61.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 8.7e-183 644.4 683 57.5
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.1e-180 636.0 516 71.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.5e-179 633.6 647 60.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.2e-177 625.9 613 61.8
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.1e-177 624.8 666 55.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.2e-171 607.4 512 67.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-171 607.4 726 51.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 3.6e-168 595.9 694 55.0
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.0e-164 581.3 569 57.5
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.7e-160 569.7 621 59.1
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.1e-159 565.5 496 67.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 6.7e-159 565.1 664 51.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 3.1e-156 556.2 464 69.2
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.3e-151 540.0 661 53.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.1e-148 531.2 666 49.1
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.0e-147 526.9 601 52.9
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.2e-146 523.5 610 55.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.2e-144 517.7 661 48.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.2e-142 511.1 612 53.8
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.2e-138 496.9 618 53.6
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 8.5e-138 495.0 687 51.2
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.2e-136 491.1 663 48.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-131 474.6 405 68.6
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 4.2e-129 466.1 461 62.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.9e-117 426.8 592 45.4
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.4e-116 422.5 717 41.6
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.3e-114 417.2 607 44.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.2e-107 394.8 303 76.9
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-107 394.8 598 44.1
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.6e-105 386.0 563 44.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.2e-104 384.8 503 52.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-104 382.1 278 74.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-103 380.9 665 42.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.3e-97 360.1 654 41.6
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 7.3e-97 359.0 545 44.8
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 4.0e-87 326.6 309 70.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 3.0e-74 283.9 273 71.4
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.0e-71 272.3 296 55.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.7e-66 255.8 180 83.3
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-64 251.9 156 87.2
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 6.7e-58 229.6 312 52.2
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.7e-50 203.0 188 76.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.7e-49 199.9 291 42.6
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-46 191.4 290 47.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.9e-42 177.2 103 92.2
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-38 165.2 90 92.2
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-38 165.2 90 92.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.0e-37 162.5 218 59.6
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.2e-36 157.5 277 44.0
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 6.1e-35 153.3 79 97.5
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.0e-33 148.3 200 48.0
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.3e-32 143.3 81 79.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-29 135.6 289 32.5
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.3e-24 116.7 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.8e-21 107.5 224 34.4
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-17 95.9 58 74.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 4.4e-17 94.0 326 25.2
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-16 92.0 167 34.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 4.5e-14 84.0 51 80.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-12 79.3 63 58.7
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.8e-11 74.7 235 28.9
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 4.9e-08 63.9 53 56.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.2e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.6e-06 58.9 32 90.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 2.0e-06 58.5 55 47.3
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 2.7e-06 58.2 58 56.9
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.5e-06 57.4 53 58.5


User provided reference genes

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