Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 2.6e-270 934.9 499 100.0
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.4e-233 811.2 499 90.2
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 1.0e-221 773.5 499 86.2
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 1.2e-201 706.8 496 79.6
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.3e-186 656.0 506 74.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 3.7e-184 648.7 515 73.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.2e-183 645.6 515 72.6
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.2e-183 645.6 515 72.6
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 5.8e-177 624.8 499 71.1
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.2e-171 604.7 499 69.1
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.4e-170 603.6 499 68.5
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 2.9e-168 595.9 499 67.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.7e-160 570.1 483 67.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.5e-143 513.1 499 58.9
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.5e-135 486.5 518 57.5
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.9e-120 436.4 498 50.4
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 2.3e-117 426.8 496 49.0
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.3e-115 421.0 497 48.7
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.8e-115 419.1 495 50.1
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.0e-113 413.7 495 49.3
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.2e-112 410.2 498 50.6
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.2e-111 406.4 495 47.9
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.6e-110 404.1 206 99.5
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 3.6e-110 402.9 496 47.6
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.7e-107 394.0 496 48.0
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 8.2e-107 391.7 343 68.2
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 2.0e-105 387.1 499 45.9
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.0e-104 382.5 484 48.1
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.2e-103 379.4 496 46.6
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-101 374.4 493 44.0
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.4e-101 374.4 206 98.5
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-101 374.4 496 46.4
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 2.3e-101 373.6 498 44.8
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 8.8e-101 371.7 498 45.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.2e-100 371.3 477 46.5
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 3.4e-100 369.8 495 43.4
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 4.4e-100 369.4 433 48.3
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 3.7e-99 366.3 496 43.3
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.4e-98 364.4 495 43.2
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.8e-98 364.0 496 45.4
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 4.1e-98 362.8 431 47.8
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.2e-97 361.3 602 39.4
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.0e-97 360.5 498 43.0
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.9e-95 354.0 448 46.9
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.5e-95 353.6 496 42.1
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 1.4e-93 347.8 495 41.6
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 3.0e-93 346.7 495 42.2
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 3.0e-93 346.7 495 42.8
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 7.5e-92 342.0 497 42.3
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.8e-91 340.1 487 44.1
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.3e-91 339.0 495 41.6
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.4e-90 337.0 496 41.9
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 1.2e-89 334.7 495 40.8
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.2e-89 334.7 619 39.6
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.0e-89 334.0 488 42.8
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.7e-88 330.9 497 41.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.8e-88 329.7 491 43.4
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.1e-87 328.2 497 40.8
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.6e-86 324.3 495 42.0
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 2.8e-86 323.6 498 38.6
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.8e-86 323.6 498 41.4
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 6.1e-86 322.4 497 39.6
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.0e-85 321.6 499 43.7
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.0e-85 321.6 473 43.1
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.8e-85 320.9 499 42.7
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.3e-85 320.5 496 41.3
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 6.8e-85 318.9 524 39.5
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 5.7e-84 315.8 361 50.7
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.9e-83 313.5 498 41.4
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 3.7e-83 313.2 498 39.8
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 6.4e-83 312.4 495 39.6
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 6.4e-83 312.4 503 42.1
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 8.3e-83 312.0 495 39.0
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.4e-82 310.5 381 49.3
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 7.0e-82 308.9 498 37.6
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 4.6e-81 306.2 494 38.7
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 5.9e-81 305.8 483 39.5
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.7e-80 304.3 498 39.6
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-80 303.9 517 37.9
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 2.3e-80 303.9 494 38.5
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.0e-80 303.5 483 39.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.5e-79 300.4 427 42.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 3.3e-79 300.1 496 38.9
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.3e-79 298.9 496 39.3
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 9.5e-79 298.5 496 40.7
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-77 294.7 517 36.9
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.8e-77 294.3 488 38.9
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 6.8e-77 292.4 498 38.4
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.6e-76 290.4 498 38.2
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.1e-74 283.1 504 39.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 5.4e-74 282.7 496 37.5
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.4e-74 282.7 473 39.3
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 4.6e-73 279.6 499 37.5
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.0e-72 278.5 497 37.8
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 2.5e-71 273.9 500 38.0
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 6.2e-70 269.2 408 41.4
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 6.2e-70 269.2 498 36.3
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.8e-69 267.7 488 36.9
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.1e-69 266.9 497 37.2
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.8e-69 265.8 499 36.3
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.0e-68 264.2 438 38.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 2.6e-68 263.8 495 34.5
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 3.4e-68 263.5 498 36.5
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 9.8e-68 261.9 497 36.8
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.4e-67 259.2 495 34.3
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 3.2e-66 256.9 503 37.2
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.7e-65 253.8 456 37.9
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 1.0e-64 251.9 273 50.5
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-62 245.0 310 47.1
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 8.1e-62 242.3 415 37.1
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 7.6e-60 235.7 494 32.2
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.3e-59 235.0 383 39.9
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-57 227.6 471 37.8
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.7e-56 224.6 449 34.3
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.9e-56 223.4 221 52.0
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.7e-51 208.0 499 30.9
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 6.4e-51 206.1 517 31.5
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.2e-50 203.4 246 46.3
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-48 198.4 286 43.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 2.5e-47 194.1 408 34.3
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-45 188.0 636 26.9
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.2e-44 185.3 260 41.9
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.6e-44 184.1 499 28.9
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.4e-43 179.1 449 31.6
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.4e-42 178.3 490 30.0
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.0e-40 172.2 206 42.7
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 9.9e-36 155.6 253 41.9
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 6.0e-33 146.4 239 44.8
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.5e-31 141.7 394 30.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 2.3e-24 117.9 203 39.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 8.7e-24 115.9 183 38.8
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 1.1e-21 109.0 490 25.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.4e-21 108.6 97 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 4.1e-21 107.1 275 30.5
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 7.2e-18 96.3 468 23.5
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.3e-16 92.0 347 24.5
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 3.0e-16 90.9 82 59.8
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 3.9e-16 90.5 149 41.6
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 5.1e-16 90.1 405 26.9
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-15 88.6 99 44.4
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.5e-15 87.8 107 49.5
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 3.3e-15 87.4 209 31.1
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 3.3e-15 87.4 74 62.2
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.7e-14 84.0 72 51.4
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 5.9e-12 76.6 136 39.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 9.4e-10 69.3 94 43.6
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.4e-10 69.3 477 26.0
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-09 68.9 73 57.5
AL5G11880 Arabidopsis lyrata HOM05D000513 ORTHO05D005419 1.1e-07 62.4 103 49.5
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.4e-07 60.5 68 50.0
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 7.4e-07 59.7 73 38.4


User provided reference genes

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