Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 8.0e-146 520.4 261 100.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 8.0e-146 520.4 261 100.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 8.0e-146 520.4 261 100.0
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.1e-137 493.4 261 94.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.3e-132 475.7 261 92.7
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.3e-132 475.7 261 92.7
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.8e-122 442.2 263 86.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.4e-112 408.7 258 80.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 7.6e-112 407.5 222 92.3
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 3.6e-106 388.7 261 75.9
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 4.8e-106 388.3 222 86.5
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.4e-105 386.0 222 86.9
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 9.9e-104 380.6 222 86.0
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 2.2e-103 379.4 222 85.6
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.8e-92 343.2 266 65.8
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.1e-90 336.3 260 66.5
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.1e-89 334.0 265 64.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.8e-89 333.2 259 63.3
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 9.0e-89 330.9 264 64.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.5e-88 328.6 272 62.9
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 5.9e-88 328.2 232 69.0
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.0e-87 327.4 259 62.9
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 1.0e-87 327.4 259 62.9
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.3e-87 327.0 259 62.5
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 2.2e-87 326.2 258 62.8
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.8e-87 325.5 257 64.2
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.5e-86 322.8 239 66.5
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 2.5e-86 322.8 262 63.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 4.2e-86 322.0 241 66.0
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 4.2e-86 322.0 268 62.3
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.6e-85 320.1 269 60.2
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 2.7e-85 319.3 263 61.2
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 4.6e-85 318.5 240 65.4
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 6.1e-85 318.2 263 60.5
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 2.3e-84 316.2 259 60.2
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.1e-83 313.9 240 64.2
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.5e-83 312.8 232 66.4
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.3e-83 312.4 263 59.7
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.7e-83 311.6 227 68.3
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 5.7e-83 311.6 270 60.7
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.8e-82 308.5 258 61.2
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 1.4e-81 307.0 252 59.9
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.1e-81 305.4 270 57.4
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 5.3e-81 305.1 227 65.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 6.9e-81 304.7 264 62.5
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 9.0e-81 304.3 252 59.5
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.2e-80 303.9 242 63.6
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.0e-80 303.1 229 65.5
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.6e-80 302.8 230 65.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.0e-79 300.8 233 62.7
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.0e-79 300.8 255 59.2
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.0e-79 300.8 270 57.0
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.0e-79 300.8 270 57.0
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.3e-79 300.4 266 56.4
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.3e-79 300.4 225 66.2
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.3e-79 300.4 270 57.4
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.7e-79 300.1 265 57.0
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.7e-79 300.1 267 59.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.7e-79 300.1 227 64.3
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.2e-79 299.7 257 57.6
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.8e-79 298.9 237 62.4
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.8e-79 298.9 237 62.4
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 8.5e-79 297.7 235 60.0
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 8.5e-79 297.7 272 56.2
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 8.5e-79 297.7 251 59.4
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 8.5e-79 297.7 252 59.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.1e-78 297.4 258 58.1
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.4e-78 297.0 271 55.4
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.4e-78 297.0 263 58.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.9e-78 296.6 225 63.6
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 2.5e-78 296.2 255 58.8
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 3.2e-78 295.8 261 57.5
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 4.2e-78 295.4 242 60.3
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.2e-78 295.4 234 61.5
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 5.5e-78 295.0 246 62.2
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 7.2e-78 294.7 261 55.9
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 9.4e-78 294.3 229 62.9
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 9.4e-78 294.3 266 56.8
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.2e-77 293.9 237 61.2
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.2e-77 293.9 265 57.7
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.6e-77 293.5 228 64.5
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 6.1e-77 291.6 228 64.9
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.0e-76 290.8 228 63.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.0e-76 290.8 229 63.8
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.0e-76 290.8 235 60.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 3.9e-76 288.9 228 62.3
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 5.1e-76 288.5 260 55.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.1e-75 287.3 256 57.8
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.0e-75 286.6 273 53.5
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.3e-75 285.8 260 54.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 3.3e-75 285.8 261 55.6
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 5.7e-75 285.0 265 54.0
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.8e-74 282.0 225 60.4
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.2e-72 277.3 240 58.3
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.8e-71 272.3 326 47.9
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.4e-70 270.4 231 57.6
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 9.4e-70 267.7 246 54.5
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 3.6e-69 265.8 221 59.3
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 6.7e-68 261.5 222 58.6
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.3e-66 257.3 190 63.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 5.0e-63 245.4 197 60.9
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.5e-62 243.8 212 55.7
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.1e-59 234.2 435 35.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 3.3e-59 232.6 212 52.4
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 9.7e-59 231.1 272 47.4
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 3.5e-56 222.6 217 53.5
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 8.3e-50 201.4 162 59.3
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.4e-49 199.9 212 46.7
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 9.1e-49 198.0 211 46.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.3e-42 177.6 117 70.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 4.5e-40 169.1 164 53.7
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 5.9e-40 168.7 126 68.3
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.9e-38 163.7 111 69.4
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.5e-38 163.3 107 70.1
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.1e-37 160.2 104 71.2
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 5.9e-32 142.1 134 54.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 7.3e-30 135.2 118 60.2
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 1.8e-28 130.6 119 59.7
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.0e-28 129.4 99 57.6
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.9e-25 120.6 236 33.9
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.4e-17 94.4 85 56.5
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 7.8e-16 88.6 67 64.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 7.8e-16 88.6 67 64.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 3.3e-14 83.2 81 58.0
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.0e-11 73.9 103 47.6
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 5.6e-06 55.8 47 53.2


User provided reference genes

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