Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1670.2 840 100.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1670.2 840 100.0
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1666.4 839 99.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1593.9 841 96.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1537.3 833 95.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1535.8 833 95.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1526.9 845 91.1
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1502.3 845 90.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1502.3 845 90.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1502.3 845 90.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1502.3 845 90.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1493.8 846 88.8
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1486.5 846 90.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1479.5 833 90.0
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1469.9 837 89.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1464.9 844 87.3
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1404.0 832 85.3
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 844 83.2
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1345.5 816 82.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 819 81.9
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 845 80.8
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 846 80.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 843 80.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 845 80.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 845 80.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 851 79.8
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 831 81.2
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 849 80.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 845 79.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 819 81.2
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 844 79.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 835 80.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 840 78.8
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 834 80.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 839 79.9
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 833 80.0
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 835 80.8
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 842 79.5
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 839 80.1
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 814 81.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 833 79.7
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 838 79.4
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 845 78.5
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 832 80.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 845 78.2
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 847 79.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 842 78.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 812 80.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 840 78.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 813 80.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 842 77.1
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 823 79.1
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 836 78.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 830 79.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 840 78.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 836 78.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 825 79.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 847 78.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 835 79.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 819 79.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 830 78.8
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 869 76.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 874 72.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 817 79.3
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 832 79.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 836 78.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 840 77.6
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 837 78.0
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 784 81.5
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 822 79.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 891 75.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 822 80.0
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 826 78.3
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 806 79.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 831 77.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 835 77.6
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 837 78.5
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 830 77.8
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 837 76.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 824 78.0
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 824 77.9
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 826 78.2
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 839 77.1
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 834 78.9
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 810 78.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 818 79.2
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 821 78.6
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 790 80.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 845 76.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 832 77.9
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 832 77.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 837 76.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 793 79.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 804 78.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 834 77.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 820 77.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 838 76.6
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 816 77.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 834 77.1
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 827 77.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1235.3 831 77.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 820 79.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 807 77.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 860 72.9
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 806 77.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 813 76.8
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 818 77.5
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 825 75.8
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 861 74.3
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 801 76.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 818 75.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 810 76.8
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 813 76.4
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 870 73.4
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 828 75.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1208.4 761 80.9
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1200.3 804 75.5
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1199.5 809 74.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 845 73.4
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1194.9 813 75.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1191.0 823 74.5
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1190.6 778 79.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 847 69.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1186.8 815 76.2
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 814 76.3
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 859 72.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1179.1 818 73.3
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 753 79.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1172.1 827 74.5
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 695 82.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1166.0 832 73.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 810 73.8
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1155.2 813 73.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1152.5 810 71.5
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 813 74.4
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1136.3 811 72.0
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 892 67.9
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1127.1 808 70.7
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1117.4 817 70.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1106.3 779 71.8
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1102.8 734 77.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.6e-294 1015.4 819 67.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.9e-269 931.4 632 71.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.1e-268 928.3 579 78.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.9e-261 905.6 547 83.7
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.6e-250 867.5 535 80.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-248 863.2 836 60.0
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 2.1e-248 862.8 583 73.6
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.7e-166 590.1 720 50.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.2e-143 513.5 452 58.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.1e-135 488.4 355 76.3
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.2e-122 443.0 309 72.5
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.8e-107 393.3 315 71.7
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-96 357.8 405 51.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.8e-93 348.2 275 65.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.6e-86 323.9 580 44.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.4e-60 237.3 137 78.1
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.7e-59 234.2 156 76.3
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.8e-45 186.8 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.7e-40 172.2 503 29.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 8.6e-32 143.3 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.3e-31 140.2 473 26.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.8e-30 138.3 468 26.9
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-25 122.5 63 90.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.6e-24 117.1 96 63.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.5e-23 115.9 441 26.5
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.9e-23 115.5 412 28.4
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-20 106.3 64 71.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-17 94.4 266 28.2
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-16 92.8 123 51.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-15 88.2 220 30.5
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.2e-11 75.5 139 36.7
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.9e-11 75.1 76 48.7
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-08 63.5 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.6e-07 60.1 38 76.3


User provided reference genes

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