Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 3.4e-200 701.4 353 100.0
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 3.4e-200 701.4 353 100.0
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 4.8e-194 681.0 334 100.0
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 1.0e-191 673.3 356 96.1
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 2.2e-191 672.2 348 94.5
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 1.4e-190 669.5 355 95.8
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 3.7e-178 628.2 356 89.9
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 1.3e-175 619.8 350 88.6
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 1.4e-172 609.8 357 84.3
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 4.0e-172 608.2 353 84.4
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 6.8e-172 607.4 324 90.1
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 6.1e-165 584.3 333 85.9
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 1.0e-164 583.6 325 85.5
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 7.3e-150 534.3 338 76.9
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 9.5e-134 480.7 329 70.5
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 9.5e-134 480.7 322 71.1
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.1e-133 479.6 322 71.1
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 6.2e-133 478.0 322 71.1
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 1.1e-132 477.2 322 71.1
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.3e-132 476.1 322 70.8
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.1e-132 475.7 326 70.2
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.1e-132 475.7 322 70.5
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 1.5e-131 473.4 322 71.1
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 7.6e-131 471.1 322 71.4
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 2.2e-130 469.5 322 69.9
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 2.9e-130 469.2 317 71.0
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 3.8e-130 468.8 313 72.2
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 8.4e-130 467.6 317 70.7
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 4.1e-129 465.3 316 69.6
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 7.1e-129 464.5 316 70.9
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 7.1e-129 464.5 323 69.0
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 9.2e-129 464.2 322 69.9
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.7e-128 462.6 316 69.9
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 3.5e-128 462.2 323 69.7
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 3.5e-128 462.2 319 69.0
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 4.6e-128 461.8 319 68.3
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 1.0e-127 460.7 316 70.9
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 3.0e-127 459.1 318 68.2
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 8.6e-127 457.6 318 67.9
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 3.3e-126 455.7 317 68.1
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 3.3e-126 455.7 315 69.5
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 4.3e-126 455.3 317 70.0
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 9.6e-126 454.1 323 68.4
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 9.6e-126 454.1 316 69.0
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 1.6e-125 453.4 322 68.3
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 2.8e-125 452.6 327 66.7
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 3.6e-125 452.2 325 67.1
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 4.7e-125 451.8 326 66.9
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 6.2e-125 451.4 326 65.6
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.1e-124 450.7 323 66.9
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 2.4e-124 449.5 317 67.8
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 3.1e-124 449.1 317 67.2
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 4.0e-124 448.7 326 65.3
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 6.9e-124 448.0 323 66.9
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 2.6e-123 446.0 326 65.3
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 2.6e-123 446.0 323 66.9
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 7.6e-123 444.5 333 64.6
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 9.9e-123 444.1 317 65.9
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 1.7e-122 443.4 317 66.2
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 2.2e-122 443.0 322 67.4
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 2.9e-122 442.6 317 65.6
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 3.8e-122 442.2 316 65.8
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 6.4e-122 441.4 316 67.1
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 8.4e-122 441.0 308 67.5
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.1e-121 440.7 313 66.5
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 7.1e-121 438.0 321 67.9
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 9.3e-121 437.6 326 63.5
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 1.2e-120 437.2 323 65.6
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 2.1e-120 436.4 317 65.9
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 2.7e-120 436.0 322 65.8
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 3.5e-120 435.6 317 65.0
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 4.6e-120 435.3 317 65.3
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 7.8e-120 434.5 323 64.1
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.3e-119 433.7 314 65.3
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 1.3e-119 433.7 323 64.4
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 4.3e-118 428.7 308 65.3
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 9.6e-118 427.6 320 65.0
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 2.1e-117 426.4 321 63.6
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 2.1e-117 426.4 322 64.0
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 3.6e-117 425.6 317 62.5
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 1.4e-116 423.7 317 67.5
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 2.6e-115 419.5 330 62.4
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 7.6e-115 417.9 298 68.1
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 3.2e-113 412.5 317 62.5
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 5.1e-111 405.2 321 61.4
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 3.3e-110 402.5 323 61.0
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 1.6e-109 400.2 322 62.4
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.6e-104 383.6 320 59.4
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 3.4e-99 365.9 313 57.2
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 1.2e-96 357.5 328 55.8
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 7.9e-96 354.8 305 58.7
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 8.7e-95 351.3 280 63.9
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 7.4e-94 348.2 306 56.5
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.8e-84 317.0 308 54.5
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 6.9e-84 315.1 306 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 1.4e-81 307.4 316 49.1
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 3.6e-80 302.8 203 71.9
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 3.9e-79 299.3 244 61.1
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.8e-76 290.4 201 67.7
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 1.1e-68 264.6 197 65.5
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 9.4e-65 251.5 187 62.6
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 6.1e-64 248.8 157 76.4
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 5.9e-59 232.3 164 66.5
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.3e-58 231.1 130 81.5
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 3.8e-58 229.6 176 61.9
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.4e-52 211.1 282 45.4
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.6e-51 207.6 156 66.0
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 2.1e-48 197.2 245 46.1
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 8.3e-45 185.3 148 59.5
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 4.4e-38 162.9 86 83.7
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.2e-35 154.8 121 61.2
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.5e-33 147.1 136 55.1
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.0e-22 110.9 111 51.4
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.3e-18 98.2 72 65.3
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.0e-18 97.1 92 50.0
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 1.2e-14 85.1 156 36.5
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 2.9e-13 80.5 82 51.2
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 3.2e-12 77.0 171 31.6
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 5.2e-07 59.7 175 29.1
Cre16.g677600 Chlamydomonas reinhardtii HOM05D006598 ORTHO05D008132 3.4e-06 57.0 173 30.1


User provided reference genes

Program Settings