Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24280 Brassica napus HOM05D000149 ORTHO05D026448 1.1e-34 149.4 75 100.0
BcaB02g10081 Brassica carinata HOM05D000149 ORTHO05D000076 6.9e-34 146.7 74 97.3
BolC4t23926H Brassica oleracea HOM05D000149 ORTHO05D026448 2.1e-30 135.2 69 98.6
AT5G38100 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 1.7e-24 115.5 74 75.7
AL7G52810 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 8.5e-24 113.2 74 74.3
Sp7g03980 Schrenkiella parvula HOM05D000149 ORTHO05D000076 2.1e-22 108.6 74 66.2
Carub.0005s1248 Capsella rubella HOM05D000149 ORTHO05D000076 6.1e-22 107.1 73 68.5
A09p36990 Brassica napus HOM05D000149 ORTHO05D000076 3.0e-21 104.8 74 66.2
BcaB02g08019 Brassica carinata HOM05D000149 ORTHO05D000076 1.5e-20 102.4 74 64.9
Aa31LG9G17250 Aethionema arabicum HOM05D000149 ORTHO05D000076 4.4e-20 100.9 74 62.2
A07p19590 Brassica napus HOM05D000149 ORTHO05D000076 5.7e-20 100.5 74 63.5
BraA07t29662Z Brassica rapa HOM05D000149 ORTHO05D000076 5.7e-20 100.5 74 63.5
Carub.0007s3709 Capsella rubella HOM05D000149 ORTHO05D000076 9.7e-20 99.8 73 61.6
THA.LOC104822498 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 2.2e-19 98.6 74 60.8
C06p17990 Brassica napus HOM05D000149 ORTHO05D000076 2.8e-19 98.2 74 62.2
BolC6t36996H Brassica oleracea HOM05D000149 ORTHO05D000076 2.8e-19 98.2 74 62.2
CARHR214640 Cardamine hirsuta HOM05D000149 ORTHO05D000076 3.7e-19 97.8 74 63.5
AT5G38780 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 4.8e-19 97.4 73 61.6
AT5G37970 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 8.2e-19 96.7 74 63.5
THA.LOC104822542 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 1.1e-18 96.3 74 62.2
AT5G37990 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 1.4e-18 95.9 74 64.9
BcaC08g44356 Brassica carinata HOM05D000149 ORTHO05D000076 3.1e-18 94.7 74 60.8
AL7G52990 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 4.1e-18 94.4 74 64.9
Carub.0007s3708 Capsella rubella HOM05D000149 ORTHO05D000076 5.3e-18 94.0 73 60.3
Aa31LG2G17700 Aethionema arabicum HOM05D000149 ORTHO05D000076 1.2e-17 92.8 74 63.5
THA.LOC104822516 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 2.0e-17 92.0 72 58.3
THA.LOC104822559 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 7.7e-17 90.1 74 55.4
THA.LOC104805597 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 6.5e-16 87.0 73 54.8
THA.LOC104822531 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 8.5e-16 86.7 74 54.1
THA.LOC104822547 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 8.5e-16 86.7 74 54.1
Thhalv10028313m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 3.2e-15 84.7 61 63.9
THA.LOC104805592 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 1.2e-14 82.8 74 54.1
Aa31LG8G860 Aethionema arabicum HOM05D000149 ORTHO05D026448 6.1e-14 80.5 75 49.3
THA.LOC104805563 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 1.8e-13 79.0 74 50.0
THA.LOC104805564 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 3.0e-13 78.2 74 47.3
THA.LOC104805729 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 3.4e-12 74.7 66 50.0
THA.LOC104805730 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 1.3e-11 72.8 66 50.0
THA.LOC104822484 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 9.1e-10 66.6 66 47.0
THA.LOC104822526 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 9.1e-10 66.6 66 47.0
Potri.017G122900 Populus trichocarpa HOM05D000149 ORTHO05D000076 4.5e-09 64.3 74 37.8
Potri.017G122700 Populus trichocarpa HOM05D000149 ORTHO05D000076 1.0e-08 63.2 74 40.5
Sabra17G0104200 Salix brachista HOM05D000149 ORTHO05D000076 1.7e-08 62.4 74 39.2
Cpa.g.sc170.2 Carica papaya HOM05D000149 ORTHO05D000076 2.2e-08 62.0 74 41.9
Lj1A606T23 Lonicera japonica HOM05D000149 ORTHO05D000076 2.9e-08 61.6 74 36.5
TAR371G0466 Trochodendron aralioides HOM05D000149 ORTHO05D000076 2.9e-08 61.6 73 38.4
TAR371G0782 Trochodendron aralioides HOM05D000149 ORTHO05D000076 5.0e-08 60.8 73 37.0
AL5G23330 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 6.5e-08 60.5 65 43.1
Eucgr.B02883 Eucalyptus grandis HOM05D000149 ORTHO05D000076 8.5e-08 60.1 50 54.0
Potri.017G123000 Populus trichocarpa HOM05D000149 ORTHO05D000076 8.5e-08 60.1 73 39.7
CARHR058820 Cardamine hirsuta HOM05D000149 ORTHO05D000076 1.1e-07 59.7 73 38.4
CARHR151180 Cardamine hirsuta HOM05D000149 ORTHO05D000076 1.1e-07 59.7 66 40.9
Sp5g21680 Schrenkiella parvula HOM05D000149 ORTHO05D000076 1.1e-07 59.7 73 39.7
BcaB05g24192 Brassica carinata HOM05D000149 ORTHO05D000076 1.5e-07 59.3 73 41.1
Actinidia36691 Actinidia chinensis HOM05D000149 ORTHO05D000076 1.9e-07 58.9 75 37.3
BcaC03g14755 Brassica carinata HOM05D000149 ORTHO05D000076 1.9e-07 58.9 73 39.7
A02p13700 Brassica napus HOM05D000149 ORTHO05D000076 1.9e-07 58.9 73 39.7
C02p22080 Brassica napus HOM05D000149 ORTHO05D000076 1.9e-07 58.9 73 39.7
BraA02t06428Z Brassica rapa HOM05D000149 ORTHO05D000076 1.9e-07 58.9 73 39.7
Potri.017G122950 Populus trichocarpa HOM05D000149 ORTHO05D000076 1.9e-07 58.9 74 33.8
Prupe.1G321200 Prunus persica HOM05D000149 ORTHO05D000076 1.9e-07 58.9 50 50.0
AL2G24650 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 2.5e-07 58.5 73 37.0
AT3G44870 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 2.5e-07 58.5 65 41.5
Thhalv10002598m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 2.5e-07 58.5 65 41.5
THA.LOC104805593 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 2.5e-07 58.5 73 35.6
BcaB03g14929 Brassica carinata HOM05D000149 ORTHO05D000076 3.2e-07 58.2 66 37.9
BcaC08g46113 Brassica carinata HOM05D000149 ORTHO05D000076 3.2e-07 58.2 66 39.4
BolC2t08341H Brassica oleracea HOM05D000149 ORTHO05D000076 3.2e-07 58.2 73 39.7
Hma1.2p1_1029F.1_g249570 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 3.2e-07 58.2 74 35.1
Hma1.2p1_3112F.1_g332766 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 3.2e-07 58.2 74 35.1
BcaC08g46115 Brassica carinata HOM05D000149 ORTHO05D000076 4.2e-07 57.8 66 39.4
BcaC08g46146 Brassica carinata HOM05D000149 ORTHO05D000076 4.2e-07 57.8 66 39.4
COL.COLO4_27636 Corchorus olitorius HOM05D000149 ORTHO05D000076 4.2e-07 57.8 69 43.5
Lj1A603T12 Lonicera japonica HOM05D000149 ORTHO05D000076 4.2e-07 57.8 74 35.1
BolC2t08336H Brassica oleracea HOM05D000149 ORTHO05D000076 5.5e-07 57.4 72 38.9
BolC2t08337H Brassica oleracea HOM05D000149 ORTHO05D000076 5.5e-07 57.4 72 38.9
Cpa.g.sc116.4 Carica papaya HOM05D000149 ORTHO05D000076 5.5e-07 57.4 73 37.0
Manes.01G114200 Manihot esculenta HOM05D000149 ORTHO05D000076 5.5e-07 57.4 53 49.1
Sp5g21670 Schrenkiella parvula HOM05D000149 ORTHO05D000076 5.5e-07 57.4 66 37.9
TAR371G0648 Trochodendron aralioides HOM05D000149 ORTHO05D000076 5.5e-07 57.4 74 40.5
Aa31LG2G3190 Aethionema arabicum HOM05D000149 ORTHO05D000076 7.2e-07 57.0 60 41.7
BcaC08g46142 Brassica carinata HOM05D000149 ORTHO05D000076 7.2e-07 57.0 66 37.9
Oeu008438.1 Olea europaea HOM05D000149 ORTHO05D000076 7.2e-07 57.0 77 36.4
Thecc.10G169800 Theobroma cacao HOM05D000149 ORTHO05D000076 7.2e-07 57.0 50 52.0
TAR629G2002 Trochodendron aralioides HOM05D000149 ORTHO05D000076 7.2e-07 57.0 67 40.3
AT1G66700 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 9.4e-07 56.6 72 37.5
BcaC03g14753 Brassica carinata HOM05D000149 ORTHO05D000076 9.4e-07 56.6 72 38.9
BcaC08g46102 Brassica carinata HOM05D000149 ORTHO05D000076 9.4e-07 56.6 66 37.9
A09p57470 Brassica napus HOM05D000149 ORTHO05D000076 9.4e-07 56.6 65 36.9
C02p22050 Brassica napus HOM05D000149 ORTHO05D000076 9.4e-07 56.6 72 38.9
C02p22060 Brassica napus HOM05D000149 ORTHO05D000076 9.4e-07 56.6 72 38.9
C06p39880 Brassica napus HOM05D000149 ORTHO05D000076 9.4e-07 56.6 66 37.9
BraA09t41138Z Brassica rapa HOM05D000149 ORTHO05D000076 9.4e-07 56.6 65 36.9
Carub.0002s1289 Capsella rubella HOM05D000149 ORTHO05D000076 9.4e-07 56.6 73 41.1
Hma1.2p1_0283F.1_g113730 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 9.4e-07 56.6 74 40.5
SalBow8G5547 Salvia bowleyana HOM05D000149 ORTHO05D000076 9.4e-07 56.6 50 52.0
Sp5g21690 Schrenkiella parvula HOM05D000149 ORTHO05D000076 9.4e-07 56.6 62 41.9
AT3G44860 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 1.2e-06 56.2 65 40.0
MSTRG.23604 Avicennia marina HOM05D000149 ORTHO05D000076 1.2e-06 56.2 73 41.1
BcaB03g15239 Brassica carinata HOM05D000149 ORTHO05D000076 1.2e-06 56.2 73 35.6
BcaC03g14754 Brassica carinata HOM05D000149 ORTHO05D000076 1.2e-06 56.2 72 37.5
BcaB03g15240 Brassica carinata HOM05D000149 ORTHO05D000076 1.6e-06 55.8 66 37.9
BcaC07g41053 Brassica carinata HOM05D000149 ORTHO05D000076 1.6e-06 55.8 65 36.9
A07p33490 Brassica napus HOM05D000149 ORTHO05D000076 1.6e-06 55.8 66 37.9
C02p22040 Brassica napus HOM05D000149 ORTHO05D000076 1.6e-06 55.8 66 40.9
C08p40550 Brassica napus HOM05D000149 ORTHO05D000076 1.6e-06 55.8 65 36.9
BraA07t30975Z Brassica rapa HOM05D000149 ORTHO05D000076 1.6e-06 55.8 66 37.9
Carub.0005s1061 Capsella rubella HOM05D000149 ORTHO05D000076 1.6e-06 55.8 68 39.7
Eucgr.L00974 Eucalyptus grandis HOM05D000149 ORTHO05D000076 1.6e-06 55.8 49 53.1
Thhalv10018785m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 1.6e-06 55.8 66 36.4
Dinv15610 Davidia involucrata HOM05D000149 ORTHO05D000076 2.1e-06 55.5 73 35.6
Dinv19753 Davidia involucrata HOM05D000149 ORTHO05D000076 2.1e-06 55.5 49 49.0
vmacro09187 Vaccinium macrocarpon HOM05D000149 ORTHO05D000076 2.1e-06 55.5 49 53.1
BcaC03g14759 Brassica carinata HOM05D000149 ORTHO05D026448 2.7e-06 55.1 66 39.4
BolC6t39078H Brassica oleracea HOM05D000149 ORTHO05D000076 2.7e-06 55.1 66 36.4
Dinv06610 Davidia involucrata HOM05D000149 ORTHO05D000076 2.7e-06 55.1 73 34.2
Potri.017G122000 Populus trichocarpa HOM05D000149 ORTHO05D000076 2.7e-06 55.1 49 44.9
RcHm_v2.0_Chr7g0178951 Rosa chinensis HOM05D000149 ORTHO05D000076 2.7e-06 55.1 50 48.0
TAR371G0562 Trochodendron aralioides HOM05D000149 ORTHO05D000076 2.7e-06 55.1 74 36.5
AT1G66690 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 3.6e-06 54.7 72 36.1
BolC2t08339H Brassica oleracea HOM05D000149 ORTHO05D000076 3.6e-06 54.7 72 37.5
BolC6t39087H Brassica oleracea HOM05D000149 ORTHO05D000076 3.6e-06 54.7 66 37.9
Carub.0002s1292 Capsella rubella HOM05D000149 ORTHO05D000076 3.6e-06 54.7 73 39.7
Cpa.g.sc170.1 Carica papaya HOM05D000149 ORTHO05D000076 3.6e-06 54.7 72 38.9
Thhalv10019552m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 3.6e-06 54.7 66 36.4
Aa31LG4G14220 Aethionema arabicum HOM05D000149 ORTHO05D000076 4.7e-06 54.3 67 38.8
Aa31sc2561G10 Aethionema arabicum HOM05D000149 ORTHO05D000076 4.7e-06 54.3 67 38.8
C06p40090 Brassica napus HOM05D000149 ORTHO05D000076 4.7e-06 54.3 66 36.4
Migut.E00399 Erythranthe guttata HOM05D000149 ORTHO05D000076 4.7e-06 54.3 50 48.0
FvH4_7g18490 Fragaria vesca HOM05D000149 ORTHO05D000076 4.7e-06 54.3 69 40.6
FAN01G1979 Fragaria x ananassa HOM05D000149 ORTHO05D000076 4.7e-06 54.3 69 40.6
FAN06G0422 Fragaria x ananassa HOM05D000149 ORTHO05D000076 4.7e-06 54.3 69 40.6
FAN06G2908 Fragaria x ananassa HOM05D000149 ORTHO05D000076 4.7e-06 54.3 69 40.6
TPR.G4891 Trifolium pratense HOM05D000149 ORTHO05D000076 4.7e-06 54.3 74 36.5
Dinv06608 Davidia involucrata HOM05D000149 ORTHO05D000076 6.1e-06 53.9 74 35.1
Potri.012G049900 Populus trichocarpa HOM05D000149 ORTHO05D000076 6.1e-06 53.9 47 51.1
SGA_v2.0_scaffold14G06921 Striga asiatica HOM05D000149 ORTHO05D000076 6.1e-06 53.9 50 50.0
TAR629G0671 Trochodendron aralioides HOM05D000149 ORTHO05D000076 6.1e-06 53.9 55 43.6
GSVIVG01008380001 Vitis vinifera HOM05D000149 ORTHO05D000076 6.1e-06 53.9 47 48.9
BcaB05g24187 Brassica carinata HOM05D000149 ORTHO05D000076 8.0e-06 53.5 72 36.1
BcaB05g24190 Brassica carinata HOM05D000149 ORTHO05D000076 8.0e-06 53.5 72 36.1
Dinv10416 Davidia involucrata HOM05D000149 ORTHO05D000076 8.0e-06 53.5 49 46.9
Eucgr.B02886 Eucalyptus grandis HOM05D000149 ORTHO05D000076 8.0e-06 53.5 50 46.0
Prupe.5G228900 Prunus persica HOM05D000149 ORTHO05D000076 8.0e-06 53.5 49 44.9
Sabra12G0035400 Salix brachista HOM05D000149 ORTHO05D000076 8.0e-06 53.5 47 48.9
Thecc.10G170000 Theobroma cacao HOM05D000149 ORTHO05D000076 8.0e-06 53.5 75 40.0
GSVIVG01030939001 Vitis vinifera HOM05D000149 ORTHO05D000076 8.0e-06 53.5 74 37.8


User provided reference genes

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