Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 2.7e-46 188.3 96 100.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.5e-44 182.6 98 96.9
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 5.9e-38 160.6 95 90.5
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 6.1e-35 150.6 95 85.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.1e-35 150.6 95 85.3
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.4e-34 149.4 95 84.2
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-34 149.1 95 83.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.8e-34 149.1 95 83.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.1e-34 148.3 95 83.2
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-34 147.9 95 82.1
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.0e-34 147.9 95 82.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 4.0e-34 147.9 95 82.1
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.0e-34 147.9 95 83.2
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.2e-33 146.4 95 83.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.6e-33 145.2 95 81.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 3.4e-33 144.8 92 84.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.4e-33 144.4 95 82.1
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.8e-33 144.1 95 82.1
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.3e-32 142.9 95 80.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.2e-32 142.1 95 80.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-31 139.8 94 79.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.4e-31 138.7 93 79.6
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.3e-29 132.1 95 72.6
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 6.6e-29 130.6 95 71.6
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.1e-28 129.8 95 69.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-28 129.4 95 71.6
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.9e-28 129.0 95 69.5
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.5e-28 128.6 95 69.5
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.3e-28 128.3 95 71.6
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 5.6e-28 127.5 95 68.4
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.6e-28 127.5 95 70.5
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 5.6e-28 127.5 95 70.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 7.3e-28 127.1 94 69.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 7.3e-28 127.1 95 68.4
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 7.3e-28 127.1 95 69.5
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.3e-28 127.1 95 69.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 9.5e-28 126.7 95 67.4
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 9.5e-28 126.7 95 69.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 9.5e-28 126.7 95 68.4
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.2e-27 126.3 95 69.5
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.6e-27 125.9 95 67.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.1e-27 125.6 95 68.4
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.1e-27 125.6 95 69.5
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.1e-27 125.6 95 69.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.8e-27 125.2 95 67.4
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.8e-27 125.2 95 69.5
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.7e-27 124.4 95 68.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.7e-27 124.4 95 70.5
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.7e-27 124.4 95 69.5
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 6.2e-27 124.0 95 67.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.2e-27 124.0 95 69.5
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 6.2e-27 124.0 95 64.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.2e-27 124.0 95 68.4
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 68.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 67.4
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 66.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 67.4
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 66.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 66.3
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 68.4
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.0e-27 123.6 95 69.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 66.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 67.4
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 64.2
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 67.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 67.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 67.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 68.4
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 66.3
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.1e-26 123.2 95 67.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.4e-26 122.9 95 68.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.4e-26 122.9 95 67.4
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.4e-26 122.9 95 68.4
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.4e-26 122.9 94 68.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-26 122.5 95 66.3
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-26 122.5 95 66.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-26 122.5 95 64.2
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.3e-26 122.1 95 67.4
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-26 122.1 95 67.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.3e-26 122.1 95 67.4
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.1e-26 121.7 95 67.4
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.2e-26 120.9 95 67.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 5.2e-26 120.9 95 66.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.2e-26 120.9 95 67.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 6.8e-26 120.6 95 66.3
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.8e-26 120.6 95 67.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 8.9e-26 120.2 95 66.3
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.9e-26 120.2 95 65.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.9e-26 120.2 95 66.3
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.9e-26 120.2 95 67.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.9e-26 120.2 95 66.3
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.2e-25 119.8 95 66.3
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.2e-25 119.8 95 65.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.2e-25 119.8 95 64.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.2e-25 119.8 95 66.3
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.2e-25 119.8 95 66.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.5e-25 119.4 95 65.3
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.5e-25 119.4 95 61.1
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-25 119.4 95 66.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.5e-25 119.4 95 66.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.0e-25 119.0 95 66.3
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.0e-25 119.0 95 65.3
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.0e-25 119.0 95 66.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.6e-25 118.6 95 65.3
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.4e-25 118.2 95 65.3
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 3.4e-25 118.2 95 64.2
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.4e-25 118.2 95 66.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.4e-25 118.2 95 63.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-25 118.2 95 66.3
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.4e-25 117.9 95 66.3
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 5.8e-25 117.5 95 62.1
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 5.8e-25 117.5 96 65.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 5.8e-25 117.5 96 64.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.5e-25 117.1 95 64.2
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 9.8e-25 116.7 95 65.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 9.8e-25 116.7 95 61.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-24 116.3 95 64.2
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.3e-24 116.3 95 65.3
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.3e-24 116.3 95 63.2
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 4.9e-24 114.4 95 64.2
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 6.4e-24 114.0 95 60.0
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.3e-24 113.6 95 62.1
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.4e-23 112.8 95 61.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.4e-23 112.1 95 63.2
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 3.2e-23 111.7 95 60.0
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.1e-23 111.3 96 63.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 9.2e-23 110.2 95 63.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.7e-22 108.6 96 58.3
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.7e-22 108.6 95 62.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.5e-22 108.2 95 62.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.0e-21 106.7 85 65.9
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-21 106.7 95 60.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-21 106.7 95 60.0
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.0e-21 106.7 95 60.0
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.0e-21 106.7 95 60.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 3.9e-21 104.8 95 60.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 8.6e-21 103.6 95 60.0
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-20 102.8 95 58.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.3e-20 101.3 82 63.4
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.1e-18 96.7 95 53.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.3e-18 95.5 96 56.2
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.3e-18 95.5 95 53.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 4.0e-18 94.7 95 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.0e-17 92.4 95 49.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 8.3e-16 87.0 82 57.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 8.3e-16 87.0 96 51.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.9e-15 85.9 167 35.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.1e-15 84.7 58 74.1
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-14 83.2 98 51.0
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.7e-14 82.0 94 46.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.0e-13 78.6 73 56.2
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.0e-13 78.6 76 55.3
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.9e-12 75.9 50 72.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 7.3e-12 73.9 49 67.3
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 9.6e-12 73.6 91 46.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 9.6e-12 73.6 49 67.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.1e-10 70.1 49 69.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.0e-10 68.2 87 44.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-06 56.6 48 56.2
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.6e-06 56.2 77 44.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.6e-06 54.7 36 69.4


User provided reference genes

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