Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 9.0e-49 196.8 116 100.0
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 9.0e-49 196.8 116 100.0
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 9.0e-49 196.8 116 100.0
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 5.0e-47 191.0 116 91.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 5.0e-47 191.0 116 98.3
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 9.4e-46 186.8 117 95.7
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 2.0e-43 179.1 117 87.2
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 2.0e-43 179.1 117 87.2
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 2.0e-43 179.1 117 87.2
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 9.7e-43 176.8 117 83.8
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.7e-42 176.0 118 87.3
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.2e-42 175.6 115 87.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.2e-42 175.6 115 87.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.7e-39 166.0 116 81.9
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 4.2e-38 161.4 116 76.7
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.7e-37 158.7 116 75.9
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 4.7e-37 157.9 116 87.1
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.3e-36 155.6 104 94.2
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 8.2e-34 147.1 118 81.4
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.8e-33 146.0 120 74.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.5e-32 142.9 121 71.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.8e-25 119.4 122 61.5
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 4.1e-25 118.2 119 59.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 5.3e-25 117.9 119 61.3
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 5.3e-25 117.9 119 61.3
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 7.0e-25 117.5 121 60.3
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 9.1e-25 117.1 119 61.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 121 61.2
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 119 60.5
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.5e-24 115.2 121 60.3
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 3.5e-24 115.2 119 57.1
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.5e-24 114.8 120 58.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.5e-24 114.8 118 59.3
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 5.9e-24 114.4 119 60.5
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.0e-23 113.6 112 59.8
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 118 58.5
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 120 57.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-23 113.2 119 61.3
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.3e-23 113.2 121 59.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.7e-23 112.8 119 59.7
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.2e-23 112.5 121 55.4
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.9e-23 112.1 119 54.6
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 3.8e-23 111.7 119 55.5
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 3.8e-23 111.7 119 57.1
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 56.4
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.0e-23 111.3 119 59.7
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 6.5e-23 110.9 111 56.8
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 6.5e-23 110.9 120 62.5
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 8.5e-23 110.5 121 55.4
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.5e-22 109.8 117 56.4
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.5e-22 109.8 119 58.8
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 4.2e-22 108.2 112 67.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 7.2e-22 107.5 119 57.1
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 7.2e-22 107.5 117 55.6
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 7.2e-22 107.5 114 59.6
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 9.4e-22 107.1 112 53.6
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 9.4e-22 107.1 121 53.7
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.2e-21 106.7 111 55.0
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 54.2
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 58.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.6e-21 106.3 117 54.7
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.1e-21 105.9 121 55.4
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.1e-21 105.9 117 53.0
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.7e-21 105.5 118 61.0
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.7e-21 105.5 125 57.6
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 3.6e-21 105.1 116 52.6
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 4.7e-21 104.8 115 53.9
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 6.1e-21 104.4 121 54.5
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.1e-21 104.4 121 54.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.1e-21 104.4 119 52.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 6.1e-21 104.4 114 57.0
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 6.1e-21 104.4 126 57.9
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 8.0e-21 104.0 119 56.3
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 8.0e-21 104.0 119 54.6
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 8.0e-21 104.0 119 52.1
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-20 103.6 118 55.9
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-20 103.6 116 54.3
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.0e-20 103.6 119 52.9
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.0e-20 103.6 117 52.1
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.4e-20 103.2 122 51.6
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.4e-20 103.2 117 53.8
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.3e-20 102.4 117 53.0
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-20 102.4 121 53.7
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.3e-20 102.4 119 52.9
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.3e-20 102.4 116 53.4
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.3e-20 102.4 111 54.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 3.0e-20 102.1 114 62.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.0e-20 101.7 118 55.1
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 4.0e-20 101.7 113 61.1
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 122 52.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-20 101.3 113 55.8
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 6.8e-20 100.9 118 54.2
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.8e-20 100.9 119 54.6
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.2e-19 100.1 122 53.3
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-19 99.8 115 52.2
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 3.4e-19 98.6 130 53.1
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.4e-19 98.2 116 56.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 5.7e-19 97.8 116 55.2
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.7e-18 96.3 122 51.6
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.7e-18 96.3 122 51.6
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.2e-18 95.9 105 55.2
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.8e-18 95.5 121 57.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.7e-18 95.1 117 47.0
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.7e-18 95.1 122 56.6
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.4e-17 93.2 114 50.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 5.3e-17 91.3 119 58.0
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 7.0e-17 90.9 113 50.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.7e-16 89.0 107 46.7
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 3.5e-16 88.6 127 49.6
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.2e-15 85.9 112 51.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.8e-15 85.1 118 49.2
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 8.5e-15 84.0 125 42.4
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 8.5e-15 84.0 117 48.7
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.5e-14 82.4 105 53.3
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.6e-13 79.7 119 49.6
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.8e-12 76.3 115 52.2
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.8e-12 76.3 115 49.6
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 4.0e-12 75.1 106 47.2
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.0e-11 72.8 106 46.2
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-11 72.4 117 47.9
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.4e-11 71.6 117 47.9
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 5.7e-11 71.2 153 37.3
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 7.5e-11 70.9 98 42.9
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 2.2e-10 69.3 120 41.7
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.8e-10 68.9 81 46.9
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 4.8e-10 68.2 81 46.9
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.4e-09 66.6 87 46.0
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.8e-09 66.2 57 64.9
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 2.4e-09 65.9 118 40.7
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 1.2e-08 63.5 59 62.7
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 4.5e-08 61.6 48 58.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.9e-08 61.2 80 48.8
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.0e-07 60.5 102 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 2.9e-07 58.9 117 40.2
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.6e-07 57.8 85 44.7
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.9e-06 56.2 77 44.2
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.3e-06 55.5 114 36.8
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 5.5e-06 54.7 47 61.7
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.5e-06 53.9 82 41.5


User provided reference genes

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