Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 9.0e-57 223.4 116 100.0
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.3e-55 219.5 116 98.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.2e-50 202.2 116 90.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.2e-50 202.2 116 90.5
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.9e-46 189.1 116 83.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 3.2e-46 188.3 116 81.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 3.2e-46 188.3 116 81.0
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.1e-45 185.7 116 81.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 4.6e-45 184.5 116 81.0
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 4.6e-45 184.5 116 81.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 6.1e-45 184.1 116 80.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.1e-43 179.9 116 79.3
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.8e-42 175.3 117 75.2
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 6.3e-42 174.1 116 75.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 8.2e-42 173.7 119 75.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 9.1e-41 170.2 117 76.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 9.4e-38 160.2 111 72.1
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 4.8e-34 147.9 113 69.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.1e-22 110.2 112 51.8
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 8.0e-21 104.0 117 49.6
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.0e-20 102.1 115 50.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 5.2e-20 101.3 115 49.6
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 8.8e-20 100.5 104 54.8
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 8.8e-20 100.5 115 47.8
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.4e-19 98.6 107 49.5
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 7.5e-19 97.4 113 51.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.8e-18 95.5 106 47.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.8e-18 95.5 117 46.2
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.8e-18 95.5 115 47.0
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.7e-18 95.1 117 47.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.8e-18 94.7 117 51.3
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.8e-18 94.7 108 52.8
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.3e-18 94.4 117 45.3
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 6.3e-18 94.4 116 50.9
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 6.3e-18 94.4 106 49.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.3e-18 94.0 118 47.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-17 93.6 117 48.7
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.1e-17 93.6 117 49.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.8e-17 92.8 117 43.6
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 2.4e-17 92.4 117 47.9
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 3.1e-17 92.0 109 50.5
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.1e-17 92.0 106 52.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.1e-17 91.7 95 53.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.1e-17 91.7 117 48.7
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.3e-17 91.3 115 45.2
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 7.0e-17 90.9 105 45.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 9.1e-17 90.5 107 46.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-16 90.1 116 44.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.2e-16 90.1 109 51.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.6e-16 89.7 109 47.7
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.6e-16 89.7 111 46.8
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-16 89.7 111 46.8
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.6e-16 89.7 110 47.3
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-16 89.4 111 47.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.7e-16 89.0 109 50.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.7e-16 89.0 115 43.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.7e-16 89.0 115 45.2
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-16 89.0 111 46.8
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.5e-16 88.6 111 46.8
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 5.9e-16 87.8 118 45.8
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 7.7e-16 87.4 109 46.8
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.0e-15 87.0 107 43.0
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.0e-15 87.0 109 45.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.3e-15 86.7 109 45.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.3e-15 86.7 118 44.1
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.7e-15 86.3 104 46.2
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-15 85.9 115 44.3
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-15 85.9 116 44.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.2e-15 85.9 109 45.0
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.9e-15 85.5 109 45.0
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.9e-15 85.5 109 50.5
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 2.9e-15 85.5 107 44.9
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.9e-15 85.5 109 48.6
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.8e-15 85.1 105 44.8
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.8e-15 85.1 111 46.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.8e-15 85.1 115 43.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.1e-14 83.6 115 43.5
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.1e-14 83.6 115 42.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.5e-14 83.2 108 49.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.5e-14 83.2 117 42.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 2.5e-14 82.4 108 47.2
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-14 81.6 102 45.1
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 5.5e-14 81.3 115 41.7
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 9.4e-14 80.5 117 43.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.2e-13 80.1 115 49.6
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.2e-13 80.1 105 41.9
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-13 80.1 117 47.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.6e-13 79.7 114 45.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 2.1e-13 79.3 115 42.6
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.7e-13 79.0 113 45.1
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.6e-13 78.6 114 44.7
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.7e-13 78.2 109 52.3
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 6.1e-13 77.8 108 47.2
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 6.1e-13 77.8 121 43.8
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 8.0e-13 77.4 107 44.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.0e-12 77.0 102 43.1
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-12 76.6 121 43.8
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.4e-12 76.6 106 43.4
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 5.2e-12 74.7 109 42.2
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 6.8e-12 74.3 110 42.7
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-11 73.6 108 45.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.5e-11 73.2 115 38.3
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.5e-11 73.2 103 41.7
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 5.7e-11 71.2 106 41.5
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.5e-11 70.9 111 44.1
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 9.8e-11 70.5 112 42.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.3e-10 70.1 107 40.2
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.3e-10 70.1 113 41.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.8e-10 68.9 117 40.2
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.8e-10 68.9 117 40.2
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.8e-10 68.9 120 41.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 8.3e-10 67.4 115 40.9
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 8.3e-10 67.4 112 42.0
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.1e-09 65.5 109 38.5
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 2.9e-07 58.9 118 40.7
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.9e-06 56.2 120 36.7
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 4.2e-06 55.1 117 36.8


User provided reference genes

Program Settings