Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p22260 Brassica napus HOM05D001098 ORTHO05D020149 9.8e-26 119.4 62 100.0
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 5.0e-22 107.1 57 93.0
C04p22250 Brassica napus HOM05D015960 ORTHO05D020149 1.2e-15 85.9 44 100.0
BraA07t28272Z Brassica rapa HOM05D001098 ORTHO05D020149 1.2e-12 75.9 43 90.7
CiPaw.01G102500 Carya illinoinensis HOM05D001098 ORTHO05D003515 2.0e-10 68.6 58 60.3
AL5G41220 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
AT3G59360 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
BcaC07g40278 Brassica carinata HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
BcaC07g40460 Brassica carinata HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
A04p02190 Brassica napus HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
A09p51630 Brassica napus HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
C08p34400 Brassica napus HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
BolC8t51041H Brassica oleracea HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
BraA04t15948Z Brassica rapa HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
BraA09t40603Z Brassica rapa HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
Haze_00721 Corylus avellana HOM05D001098 ORTHO05D003515 5.8e-10 67.0 41 78.0
Thhalv10006015m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 5.8e-10 67.0 43 79.1
Actinidia35960 Actinidia chinensis HOM05D001098 ORTHO05D003515 7.5e-10 66.6 43 79.1
Aa31LG10G13690 Aethionema arabicum HOM05D001098 ORTHO05D003515 7.5e-10 66.6 43 76.7
Carub.0005s2609 Capsella rubella HOM05D001098 ORTHO05D003515 7.5e-10 66.6 43 76.7
CARHR169740 Cardamine hirsuta HOM05D001098 ORTHO05D003515 7.5e-10 66.6 43 76.7
Cfa015774 Carpinus fangiana HOM05D001098 ORTHO05D003515 9.8e-10 66.2 43 74.4
CiPaw.08G112200 Carya illinoinensis HOM05D001098 ORTHO05D003515 9.8e-10 66.2 43 79.1
C04p33450 Brassica napus HOM05D001098 ORTHO05D003515 1.3e-09 65.9 43 76.7
BolC4t24909H Brassica oleracea HOM05D001098 ORTHO05D003515 1.3e-09 65.9 43 76.7
HanXRQChr07g0186261 Helianthus annuus HOM05D001098 ORTHO05D003515 1.3e-09 65.9 43 74.4
Lsat_1_v5_gn_2_51900 Lactuca sativa HOM05D001098 ORTHO05D003515 1.3e-09 65.9 43 76.7
Lj5g0027220 Lotus japonicus HOM05D001098 ORTHO05D003515 1.3e-09 65.9 43 74.4
Actinidia34622 Actinidia chinensis HOM05D001098 ORTHO05D003515 1.7e-09 65.5 43 76.7
ClCG08G004290 Citrullus lanatus HOM05D001098 ORTHO05D003515 1.7e-09 65.5 43 74.4
MBI08_g46113_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 1.7e-09 65.5 43 76.7
TAR362G0247 Trochodendron aralioides HOM05D001098 ORTHO05D003515 1.7e-09 65.5 43 76.7
TAR633G0110 Trochodendron aralioides HOM05D001098 ORTHO05D003515 1.7e-09 65.5 43 76.7
ECA233G5431 Erigeron canadensis HOM05D001098 ORTHO05D003515 2.2e-09 65.1 43 74.4
Prupe.1G187700 Prunus persica HOM05D001098 ORTHO05D003515 2.2e-09 65.1 43 74.4
QL10p047425 Quercus lobata HOM05D001098 ORTHO05D003515 2.2e-09 65.1 43 74.4
Rhsim02G0075800 Rhododendron simsii HOM05D001098 ORTHO05D003515 2.2e-09 65.1 43 76.7
Hund22601 Selenicereus undatus HOM05D001098 ORTHO05D003515 2.2e-09 65.1 49 65.3
vmacro15641 Vaccinium macrocarpon HOM05D001098 ORTHO05D003515 2.2e-09 65.1 43 76.7
Actinidia11309 Actinidia chinensis HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 74.4
Cc09_g04080 Coffea canephora HOM05D001098 ORTHO05D003515 2.9e-09 64.7 52 67.3
Dinv21354 Davidia involucrata HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 76.7
HanXRQChr02g0057871 Helianthus annuus HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 74.4
Hma1.2p1_0597F.1_g186470 Hydrangea macrophylla HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 76.7
Nn1g09874 Nelumbo nucifera HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 76.7
GSVIVG01013580001 Vitis vinifera HOM05D001098 ORTHO05D003515 2.9e-09 64.7 43 76.7
Ah.13g072980 Amaranthus hybridus HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
ATR0743G220 Amborella trichopoda HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Aqoxy2G04114 Aquilegia oxysepala HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
EL10Ac3g06301 Beta vulgaris HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
CAN.G710.62 Capsicum annuum HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Eucgr.H00419 Eucalyptus grandis HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Glyma.20G246100 Glycine max HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Manes.13G001200 Manihot esculenta HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Nitab4.5_0001049g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Nitab4.5_0002908g0090 Nicotiana tabacum HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Peaxi162Scf00286g00116 Petunia axillaris HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Potri.017G035800 Populus trichocarpa HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Sc19g0002170 Simmondsia chinensis HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Solyc09g098520.4 Solanum lycopersicum HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Sopen09g036440 Solanum pennellii HOM05D001098 ORTHO05D003515 3.7e-09 64.3 43 74.4
Aa31LG1G25050 Aethionema arabicum HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 76.7
BolC4t28525H Brassica oleracea HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 76.7
AUR62002604 Chenopodium quinoa HOM05D001098 ORTHO05D003515 4.9e-09 63.9 44 72.7
MELO3C011623.2 Cucumis melo HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 72.1
CsaV3_6G003740 Cucumis sativus L. HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 72.1
Dinv44216 Davidia involucrata HOM05D001098 ORTHO05D003515 4.9e-09 63.9 44 72.7
MD13G1273000 Malus domestica HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 72.1
TWI18G0847 Tripterygium wilfordii HOM05D001098 ORTHO05D003515 4.9e-09 63.9 43 76.7
AUR62030022 Chenopodium quinoa HOM05D001098 ORTHO05D003515 6.4e-09 63.5 44 70.5
FvH4_4g11380 Fragaria vesca HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
FAN17G2346 Fragaria x ananassa HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
MD04G1037800 Malus domestica HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
Manes.11G116200 Manihot esculenta HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 74.4
Medtr1g116565 Medicago truncatula HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
PGR142G0121 Punica granatum HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
RcHm_v2.0_Chr4g0407851 Rosa chinensis HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 72.1
Sp5g03760 Schrenkiella parvula HOM05D001098 ORTHO05D003515 6.4e-09 63.5 43 74.4
arahy.Tifrunner.gnm1.ann1.8ZHK7B Arachis hypogaea HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
arahy.Tifrunner.gnm1.ann1.UD8U5Y Arachis hypogaea HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Cpa.g.sc71.26 Carica papaya HOM05D001098 ORTHO05D003515 8.3e-09 63.2 48 62.5
COL.COLO4_14417 Corchorus olitorius HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Eucgr.A00254 Eucalyptus grandis HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 74.4
Glyma.10G296000 Glycine max HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Gohir.A11G329800 Gossypium hirsutum HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Gohir.D08G275200 Gossypium hirsutum HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Gohir.D11G349000 Gossypium hirsutum HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Gorai.004G293600 Gossypium raimondii HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Gorai.007G379300 Gossypium raimondii HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
SGA_v2.0_scaffold12G06145 Striga asiatica HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
Thecc.05G002800 Theobroma cacao HOM05D001098 ORTHO05D003515 8.3e-09 63.2 43 72.1
AL4G41900 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 74.4
CSS0017763 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 72.1
Carub.0004s2571 Capsella rubella HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 74.4
CDE08G0816 Ceratophyllum demersum HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 69.8
Hund12228 Selenicereus undatus HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 72.1
SGA_v2.0_scaffold17G08059 Striga asiatica HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 72.1
THA.LOC104802300 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 1.1e-08 62.8 43 74.4
Ciclev10020426m.g Citrus clementina HOM05D001098 ORTHO05D003515 1.4e-08 62.4 43 69.8
FAN07G1473 Fragaria x ananassa HOM05D001098 ORTHO05D003515 1.4e-08 62.4 43 69.8
Lalb_Chr06g0164491 Lupinus albus HOM05D001098 ORTHO05D003515 1.4e-08 62.4 43 69.8
Sed0001161 Sechium edule HOM05D001098 ORTHO05D003515 1.4e-08 62.4 43 72.1
BcaB01g03402 Brassica carinata HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
BcaC01g05248 Brassica carinata HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
BcaC02g07198 Brassica carinata HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
A03p24140 Brassica napus HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
A04p32520 Brassica napus HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
C03p28730 Brassica napus HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
C04p70210 Brassica napus HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
BolC3t15235H Brassica oleracea HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
BraA03t11624Z Brassica rapa HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
BraA04t18716Z Brassica rapa HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
Thhalv10001470m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
Os04g0490600 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 72.1
Potri.010G180500 Populus trichocarpa HOM05D001098 ORTHO05D003515 1.9e-08 62.0 43 74.4
SalBow3G4600 Salvia bowleyana HOM05D001098 ORTHO05D003515 1.9e-08 62.0 44 70.5
Atru.chr3.1600 Acer truncatum HOM05D001098 ORTHO05D003515 2.4e-08 61.6 43 72.1
Atru.chr3.1608 Acer truncatum HOM05D001098 ORTHO05D003515 2.4e-08 61.6 43 72.1
AT2G43240 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 2.4e-08 61.6 43 72.1
BcaB06g29292 Brassica carinata HOM05D001098 ORTHO05D003515 2.4e-08 61.6 43 74.4
Duzib093G0299 Durio zibethinus HOM05D001098 ORTHO05D003515 2.4e-08 61.6 43 69.8
CARHR138320 Cardamine hirsuta HOM05D001098 ORTHO05D003515 3.2e-08 61.2 43 72.1
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.2e-08 61.2 73 49.3
Lj6C60G7 Lonicera japonica HOM05D001098 ORTHO05D003515 3.2e-08 61.2 39 74.4
Lalb_Chr02g0144331 Lupinus albus HOM05D001098 ORTHO05D003515 3.2e-08 61.2 43 67.4
Lalb_Chr21g0307611 Lupinus albus HOM05D001098 ORTHO05D003515 3.2e-08 61.2 43 67.4
THA.LOC104803609 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 3.2e-08 61.2 43 69.8
unitig_8.g4799 Utricularia gibba HOM05D001098 ORTHO05D003515 3.2e-08 61.2 43 67.4
Zm00001eb365640 Zea mays HOM05D001098 ORTHO05D003515 3.2e-08 61.2 42 71.4
Actinidia39858 Actinidia chinensis HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 69.8
MSTRG.21995 Avicennia marina HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 72.1
DCAR_027528 Daucus carota HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 67.4
FAN02G0815 Fragaria x ananassa HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 69.8
Gohir.A08G227500 Gossypium hirsutum HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 74.4
Gohir.D08G247900 Gossypium hirsutum HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 74.4
Gorai.004G264400 Gossypium raimondii HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 74.4
Oeu034469.1 Olea europaea HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 69.8
PGR083G2776 Punica granatum HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 65.1
Sed0004441 Sechium edule HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 69.8
VMungo0720G2121 Vigna mungo HOM05D001098 ORTHO05D003515 4.1e-08 60.8 43 69.8
CANSAT54G1180 Cannabis sativa HOM05D001098 ORTHO05D003515 5.4e-08 60.5 43 72.1
Potri.008G077300 Populus trichocarpa HOM05D001098 ORTHO05D003515 5.4e-08 60.5 43 72.1
Zm00001eb184070 Zea mays HOM05D001098 ORTHO05D003515 5.4e-08 60.5 43 69.8
Zm00001eb246560 Zea mays HOM05D001098 ORTHO05D003515 5.4e-08 60.5 43 69.8
Dinv22694 Davidia involucrata HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 69.8
Gorai.013G111800 Gossypium raimondii HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 72.1
Lsat_1_v5_gn_1_71640 Lactuca sativa HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 67.4
PSO017G5825 Papaver somniferum HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 67.4
PSO675G1128 Papaver somniferum HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 67.4
Sp4g25370 Schrenkiella parvula HOM05D001098 ORTHO05D003515 7.1e-08 60.1 43 72.1
BcaC02g10053 Brassica carinata HOM05D001098 ORTHO05D003515 9.2e-08 59.7 45 71.1
BolC6t36804H Brassica oleracea HOM05D015960 ORTHO05D020149 9.2e-08 59.7 49 69.4
Cfa006231 Carpinus fangiana HOM05D001098 ORTHO05D003515 9.2e-08 59.7 43 72.1
Haze_04603 Corylus avellana HOM05D001098 ORTHO05D003515 9.2e-08 59.7 39 74.4
TPR.G10392 Trifolium pratense HOM05D001098 ORTHO05D003515 9.2e-08 59.7 43 67.4
TWI36G1504 Tripterygium wilfordii HOM05D001098 ORTHO05D003515 9.2e-08 59.7 43 72.1
Psat6g241560 Pisum sativum HOM05D001098 ORTHO05D003515 1.2e-07 59.3 43 67.4
MSTRG.24584 Avicennia marina HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 67.4
Duzib128G1666 Durio zibethinus HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 69.8
Lj3A231G6 Lonicera japonica HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 69.8
Os01g0898900 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 1.6e-07 58.9 52 61.5
Os02g0604300 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 67.4
Sabra08G0057600 Salix brachista HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 69.8
HPP92_003579 Vanilla planifolia HOM05D001098 ORTHO05D003515 1.6e-07 58.9 43 65.1
GSVIVG01014888001 Vitis vinifera HOM05D001098 ORTHO05D020149 1.6e-07 58.9 52 59.6
GSVIVG01003756001 Vitis vinifera HOM05D001098 ORTHO05D003515 2.1e-07 58.5 43 67.4
HanXRQChr05g0160081 Helianthus annuus HOM05D001098 ORTHO05D003515 2.7e-07 58.2 43 69.8
Ca_11404_v3 Cicer arietinum L. HOM05D001098 ORTHO05D003515 3.5e-07 57.8 43 65.1
Ca_30098_v3 Cicer arietinum L. HOM05D001098 ORTHO05D003515 3.5e-07 57.8 43 65.1
MBI11_g35031_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 3.5e-07 57.8 43 69.8
Phvul.007G003900 Phaseolus vulgaris HOM05D001098 ORTHO05D003515 3.5e-07 57.8 43 67.4
Thecc.05G185000 Theobroma cacao HOM05D001098 ORTHO05D003515 3.5e-07 57.8 43 67.4
Duzib106G0563 Durio zibethinus HOM05D001098 ORTHO05D003515 4.6e-07 57.4 43 67.4
Manes.12G001900 Manihot esculenta HOM05D001098 ORTHO05D003515 4.6e-07 57.4 43 67.4
Nitab4.5_0002466g0040 Nicotiana tabacum HOM05D001098 ORTHO05D003515 4.6e-07 57.4 43 67.4
Migut.G01025 Erythranthe guttata HOM05D001098 ORTHO05D003515 6.0e-07 57.0 43 62.8
CAN.G321.13 Capsicum annuum HOM05D001098 ORTHO05D003515 7.8e-07 56.6 52 59.6
Gohir.D13G099800 Gossypium hirsutum HOM05D001098 ORTHO05D003515 7.8e-07 56.6 43 69.8
Nitab4.5_0001003g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 1.7e-06 55.5 52 59.6
Peaxi162Scf00296g01214 Petunia axillaris HOM05D001098 ORTHO05D003515 1.7e-06 55.5 52 59.6
Solyc11g008610.3 Solanum lycopersicum HOM05D001098 ORTHO05D003515 2.3e-06 55.1 52 59.6
Sopen11g004400 Solanum pennellii HOM05D001098 ORTHO05D003515 2.3e-06 55.1 52 59.6
Nitab4.5_0012793g0010 Nicotiana tabacum HOM05D001098 ORTHO05D003515 3.9e-06 54.3 52 59.6


User provided reference genes

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