Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.7e-304 1048.5 818 100.0
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 4.1e-289 998.0 842 93.5
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-204 717.6 836 77.0
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 4.5e-187 659.1 854 75.6
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 2.7e-179 633.3 840 75.1
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.9e-179 632.1 862 69.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 6.9e-143 512.3 879 63.8
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 3.8e-141 506.5 903 59.9
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 5.5e-116 422.9 859 58.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 3.2e-92 344.0 886 56.4
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.6e-89 334.3 929 52.2
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 9.8e-65 252.7 331 53.2
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 9.8e-65 252.7 267 59.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 6.3e-64 250.0 267 59.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 8.3e-64 249.6 312 54.5
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 7.0e-63 246.5 338 51.2
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 9.2e-63 246.1 320 54.1
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.7e-62 244.6 292 57.5
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.8e-61 240.7 290 55.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.8e-61 240.7 258 59.3
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 6.6e-61 240.0 314 53.8
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 8.6e-61 239.6 309 54.4
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 8.6e-61 239.6 263 57.8
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.9e-60 238.4 151 80.8
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.5e-60 238.0 237 59.9
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 3.3e-60 237.7 309 54.0
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 4.3e-60 237.3 269 57.2
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.6e-60 236.9 304 55.6
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 2.1e-59 235.0 308 53.6
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 4.7e-59 233.8 314 52.2
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 6.1e-59 233.4 274 56.2
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 6.1e-59 233.4 238 59.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.0e-58 232.6 309 53.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.0e-58 232.6 309 53.1
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.4e-58 232.3 276 54.7
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.1e-58 231.1 256 57.4
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 5.2e-58 230.3 249 56.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 5.2e-58 230.3 273 56.0
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.9e-58 229.6 256 57.0
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.5e-57 228.8 317 51.7
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.5e-57 228.8 322 49.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 2.6e-57 228.0 249 55.4
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 4.4e-57 227.3 217 61.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 7.5e-57 226.5 255 57.3
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.8e-57 226.1 312 52.2
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-56 225.7 220 58.6
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.3e-56 225.7 308 51.6
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.7e-56 225.3 250 56.0
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 2.2e-56 224.9 677 58.6
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 2.2e-56 224.9 235 58.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.7e-56 224.2 241 58.9
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 3.7e-56 224.2 179 67.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 8.3e-56 223.0 275 54.2
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.9e-55 221.9 269 54.3
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 2.4e-55 221.5 295 51.2
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 2.4e-55 221.5 294 51.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 3.2e-55 221.1 333 48.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.4e-55 220.3 308 51.6
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 7.0e-55 219.9 322 50.6
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 9.2e-55 219.5 895 45.3
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 9.2e-55 219.5 155 74.2
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.5e-54 217.6 314 50.0
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.5e-54 217.6 937 44.5
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 7.8e-54 216.5 152 75.0
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 7.8e-54 216.5 213 58.2
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 7.8e-54 216.5 238 57.1
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.0e-53 216.1 300 50.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.3e-53 215.7 271 52.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-53 215.7 284 52.8
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.7e-53 215.3 300 51.3
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.3e-53 214.9 293 51.2
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 3.9e-53 214.2 282 51.4
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 3.9e-53 214.2 298 53.0
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 8.6e-53 213.0 336 48.8
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.1e-52 212.6 285 53.3
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.1e-52 212.6 282 49.3
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.5e-52 212.2 282 49.3
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.9e-52 211.8 242 55.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 4.3e-52 210.7 141 77.3
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 7.3e-52 209.9 239 55.2
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.6e-51 208.8 285 53.0
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.8e-51 208.0 884 43.7
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 3.6e-51 207.6 328 47.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 8.0e-51 206.5 297 50.5
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 8.0e-51 206.5 321 48.9
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.1e-50 206.1 270 53.3
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.1e-50 206.1 270 53.3
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.4e-50 205.7 153 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 3.1e-50 204.5 290 53.1
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.8e-50 203.4 147 72.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.2e-49 202.6 304 48.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.5e-49 202.2 131 75.6
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 2.0e-49 201.8 315 46.7
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 4.4e-49 200.7 316 48.1
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 4.4e-49 200.7 943 43.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 3.7e-48 197.6 140 72.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.9e-47 195.3 311 47.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 3.2e-47 194.5 210 55.7
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 9.2e-47 193.0 903 45.2
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 9.2e-47 193.0 891 45.1
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.6e-46 192.2 301 47.5
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.7e-46 191.4 294 50.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 2.3e-45 188.3 289 48.8
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.0e-45 188.0 892 44.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.5e-44 185.7 151 66.2
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-44 185.7 288 46.2
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.3e-44 184.1 146 65.1
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.1e-43 181.8 897 43.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.8e-42 178.7 887 42.5
Carub.0004s1024 Capsella rubella HOM05D005166 ORTHO05D006120 5.2e-42 177.2 690 59.4
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 5.2e-42 177.2 934 41.2
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 5.2e-42 177.2 158 62.7
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.7e-40 171.0 915 41.1
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.1e-39 169.5 245 50.6
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 5.4e-39 167.2 889 42.9
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.7e-37 162.2 265 46.4
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.9e-37 161.0 907 37.5
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.4e-31 142.5 185 48.6
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 5.4e-31 140.6 197 46.2
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 4.3e-28 131.0 134 58.2
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-25 122.9 174 44.8
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.9e-24 118.2 152 47.4
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.5e-22 111.3 159 45.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 2.5e-20 105.1 143 44.1
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.4e-18 98.6 205 42.0
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.3e-13 82.0 97 50.5
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 5.1e-13 80.9 79 54.4
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.5e-12 78.6 100 44.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.3e-08 66.2 140 31.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 4.9e-08 64.3 50 70.0
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.9e-07 62.4 251 45.0


User provided reference genes

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