Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-280 968.0 484 100.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-238 829.3 556 79.5
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 8.3e-189 664.1 511 71.0
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 8.2e-152 541.2 532 60.3
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 6.0e-147 525.0 394 74.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 7.4e-121 438.3 287 82.6
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.3e-120 437.6 283 83.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-120 436.8 287 82.6
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-120 436.4 283 83.7
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.1e-119 432.6 283 83.0
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 8.5e-117 424.9 287 79.8
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.2e-116 421.8 284 80.6
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.6e-115 419.5 287 80.1
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.7e-115 419.1 286 79.7
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.4e-111 407.5 290 76.9
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 7.5e-97 358.6 450 53.1
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.0e-94 350.5 286 68.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-93 347.8 254 75.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.4e-89 332.8 260 68.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 7.8e-86 322.0 276 64.5
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.0e-85 319.3 292 62.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 7.3e-84 315.5 293 61.1
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 9.5e-84 315.1 273 63.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-83 314.3 286 61.5
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.6e-83 314.3 275 63.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.6e-83 314.3 273 61.5
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.8e-83 313.5 296 60.5
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.7e-83 312.8 291 61.5
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.0e-83 312.0 274 63.5
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-82 311.6 292 61.3
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.6e-81 307.0 273 61.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.6e-81 307.0 279 62.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 5.8e-81 305.8 275 61.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.5e-81 305.4 260 64.6
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.7e-80 304.3 279 60.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.7e-80 303.1 276 63.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 3.7e-80 303.1 296 59.8
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.4e-80 302.4 285 58.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.3e-80 302.0 283 61.1
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 8.3e-80 302.0 294 59.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.9e-79 300.8 298 58.4
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.9e-79 300.8 299 58.9
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.1e-79 299.7 290 60.3
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 7.0e-79 298.9 285 59.6
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.6e-78 297.7 285 58.9
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 3.5e-78 296.6 282 60.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 3.5e-78 296.6 286 59.4
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 6.0e-78 295.8 277 61.7
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 6.0e-78 295.8 246 64.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.0e-78 295.8 261 62.5
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 7.8e-78 295.4 284 59.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.3e-77 294.7 298 55.7
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.3e-77 293.9 247 64.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.9e-77 293.1 283 60.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 5.1e-77 292.7 298 59.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 6.6e-77 292.4 272 62.5
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 8.6e-77 292.0 275 60.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 2.5e-76 290.4 277 60.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.3e-76 290.0 301 54.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.3e-76 290.0 285 58.6
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 4.3e-76 289.7 285 58.2
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 5.6e-76 289.3 280 58.6
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.6e-76 289.3 274 59.5
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.6e-76 289.3 267 60.3
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.1e-75 287.3 285 57.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.8e-75 287.0 262 61.1
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 6.2e-75 285.8 296 57.8
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.8e-74 284.3 261 59.8
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.8e-74 284.3 294 58.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.3e-74 283.9 312 54.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.1e-74 283.5 292 58.6
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.0e-74 283.1 292 57.2
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.5e-73 281.2 197 75.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 4.4e-73 279.6 291 57.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 7.5e-73 278.9 240 63.3
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.7e-72 277.7 290 57.9
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.2e-72 277.3 306 54.2
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 8.3e-72 275.4 303 54.5
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.1e-71 275.0 280 56.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-71 275.0 250 62.8
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.1e-71 272.3 296 54.4
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.7e-70 270.4 265 59.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 6.0e-70 269.2 277 57.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 7.8e-70 268.9 273 55.3
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 8.6e-69 265.4 291 52.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.6e-68 262.7 216 65.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-67 261.5 220 65.0
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-67 260.8 209 72.2
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.1e-66 258.5 268 56.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.6e-65 253.8 239 59.4
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 9.9e-65 251.9 273 54.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.3e-64 251.5 261 56.7
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.8e-64 250.0 276 53.3
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.9e-63 247.7 235 57.9
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 5.4e-63 246.1 283 51.2
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.6e-62 244.6 297 49.5
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 6.0e-62 242.7 234 56.8
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.6e-61 239.2 279 50.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.3e-60 236.5 200 64.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.8e-59 233.8 284 51.4
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.8e-58 231.1 211 59.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.4e-57 226.5 194 63.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 8.7e-53 212.2 339 43.1
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.1e-52 211.8 230 53.5
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.1e-50 205.3 175 61.7
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.4e-50 204.9 193 60.1
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-50 204.5 139 79.9
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 8.4e-48 195.7 139 77.0
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 5.1e-45 186.4 192 54.7
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-44 183.7 139 73.4
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 5.6e-44 183.0 171 59.1
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 3.7e-43 180.3 229 48.0
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.0e-42 176.8 177 56.5
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 7.6e-41 172.6 234 44.9
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.7e-40 171.4 112 79.5
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.7e-40 171.4 136 68.4
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.4e-40 169.5 227 42.7
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 4.2e-39 166.8 230 43.0
BcaC06g35306 Brassica carinata HOM05D005250 ORTHO05D006342 3.9e-37 160.2 79 96.2
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.6e-35 154.8 138 62.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 2.1e-35 154.5 199 49.7
BcaC04g19886 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-32 144.8 182 50.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.3e-31 139.0 168 48.2
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.3e-29 134.4 90 72.2
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 9.7e-28 129.0 90 74.4
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.4e-26 124.4 75 89.3
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-25 121.7 177 49.2
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 5.9e-25 119.8 177 48.6
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-23 115.2 91 69.2
BcaB05g23123 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-20 104.8 93 64.5
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-20 104.0 54 92.6
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-20 104.0 54 92.6
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-20 103.2 118 45.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.1e-18 97.1 141 41.1
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-16 92.4 56 85.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.0e-13 82.4 56 69.6
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 5.7e-12 76.6 137 38.0
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.7e-11 75.1 50 68.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.7e-11 73.9 62 53.2
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.0e-10 69.7 59 54.2
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 7.7e-09 66.2 76 51.3
Aa31LG10G16160 Aethionema arabicum HOM05D000068 ORTHO05D000084 2.9e-08 64.3 170 31.2
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 1.9e-07 61.6 73 52.1
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.2e-06 58.9 241 27.0
QL06p008243 Quercus lobata HOM05D000068 ORTHO05D000084 4.7e-06 57.0 148 31.1


User provided reference genes

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