Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p21260 Brassica napus HOM05D000033 ORTHO05D041607 7.6e-36 153.3 77 100.0
A03p41630 Brassica napus HOM05D000033 ORTHO05D001317 1.6e-33 145.6 77 94.8
C03p50980 Brassica napus HOM05D000033 ORTHO05D001317 1.6e-33 145.6 77 94.8
BolC3t17382H Brassica oleracea HOM05D000033 ORTHO05D001317 1.6e-33 145.6 77 94.8
BraA03t13315Z Brassica rapa HOM05D000033 ORTHO05D001317 1.6e-33 145.6 77 94.8
BcaC01g03575 Brassica carinata HOM05D000033 ORTHO05D001317 3.5e-33 144.4 77 94.8
BcaB04g19095 Brassica carinata HOM05D000033 ORTHO05D001317 8.1e-30 133.3 78 87.2
Thhalv10020208m.g Eutrema salsugineum HOM05D000033 ORTHO05D001317 2.0e-28 128.6 77 81.8
Sp3g18220 Schrenkiella parvula HOM05D000033 ORTHO05D001317 3.4e-28 127.9 77 81.8
AT3G20190 Arabidopsis thaliana HOM05D000033 ORTHO05D001317 2.9e-27 124.8 77 80.5
CARHR095780 Cardamine hirsuta HOM05D000033 ORTHO05D001317 3.8e-27 124.4 79 82.3
AL3G33890 Arabidopsis lyrata HOM05D000033 ORTHO05D001317 1.9e-26 122.1 77 79.2
C01p43970 Brassica napus HOM05D000033 ORTHO05D001317 7.4e-23 110.2 77 77.9
Carub.0003s2012 Capsella rubella HOM05D000033 ORTHO05D001317 9.6e-23 109.8 77 74.0
C03p77460 Brassica napus HOM05D000033 ORTHO05D098189 2.1e-22 108.6 61 85.2
BolC3t20001H Brassica oleracea HOM05D000033 ORTHO05D041607 2.1e-22 108.6 61 85.2
BcaC09g48968 Brassica carinata HOM05D000033 ORTHO05D001317 3.7e-22 107.8 77 75.3
A01p34580 Brassica napus HOM05D000033 ORTHO05D001317 6.3e-22 107.1 77 76.6
BcaB04g20664 Brassica carinata HOM05D000033 ORTHO05D001317 1.8e-21 105.5 77 74.0
BolC1t04360H Brassica oleracea HOM05D000033 ORTHO05D001317 2.6e-20 101.7 70 78.6
BraA01t03551Z Brassica rapa HOM05D000033 ORTHO05D001317 3.8e-19 97.8 70 77.1
Carub.0001s3965 Capsella rubella HOM05D000033 ORTHO05D001317 1.9e-18 95.5 82 59.8
Thhalv10012173m.g Eutrema salsugineum HOM05D000033 ORTHO05D001317 2.5e-18 95.1 81 61.7
AT1G50610 Arabidopsis thaliana HOM05D000033 ORTHO05D001317 3.2e-18 94.7 82 58.5
Sp1g37430 Schrenkiella parvula HOM05D000033 ORTHO05D001317 3.2e-18 94.7 79 60.8
AL1G58270 Arabidopsis lyrata HOM05D000033 ORTHO05D001317 7.2e-18 93.6 82 57.3
CARHR040660 Cardamine hirsuta HOM05D000033 ORTHO05D001317 1.6e-17 92.4 82 57.3
Aa31LG10G3730 Aethionema arabicum HOM05D000033 ORTHO05D001317 1.3e-16 89.4 82 58.5
BraA08t32342Z Brassica rapa HOM05D000033 ORTHO05D001317 1.3e-14 82.8 73 60.3
BolC3t21286H Brassica oleracea HOM05D000033 ORTHO05D001317 1.6e-14 82.4 72 61.1
THA.LOC104810243 Tarenaya hassleriana HOM05D000033 ORTHO05D001317 2.2e-14 82.0 78 60.3
BcaB04g17243 Brassica carinata HOM05D000033 ORTHO05D001317 3.7e-14 81.3 75 57.3
C05p33530 Brassica napus HOM05D000033 ORTHO05D001317 1.8e-13 79.0 81 55.6
BolC5t32079H Brassica oleracea HOM05D000033 ORTHO05D001317 1.8e-13 79.0 81 55.6
BcaC05g27407 Brassica carinata HOM05D000033 ORTHO05D001317 2.4e-13 78.6 81 55.6
A05p20050 Brassica napus HOM05D000033 ORTHO05D001317 2.4e-13 78.6 81 55.6
BraA05t20911Z Brassica rapa HOM05D000033 ORTHO05D001317 2.4e-13 78.6 81 55.6
BcaB02g11164 Brassica carinata HOM05D000033 ORTHO05D001317 9.1e-13 76.6 81 53.1
Aa31LG8G7010 Aethionema arabicum HOM05D000163 ORTHO05D000219 2.0e-12 75.5 65 61.5
BcaC01g01237 Brassica carinata HOM05D000033 ORTHO05D001317 2.6e-12 75.1 58 65.5
A08p03110 Brassica napus HOM05D000033 ORTHO05D001317 2.6e-12 75.1 58 65.5
C03p89700 Brassica napus HOM05D000033 ORTHO05D001317 2.6e-12 75.1 58 65.5
Aqoxy7G02619 Aquilegia oxysepala HOM05D000033 ORTHO05D001317 1.9e-10 68.9 77 49.4
Cpa.g.sc176.29 Carica papaya HOM05D000033 ORTHO05D001317 2.5e-10 68.6 83 50.6
Sabra14G0002200 Salix brachista HOM05D000033 ORTHO05D001317 2.5e-10 68.6 77 44.2
Sabra14G0003700 Salix brachista HOM05D000033 ORTHO05D001317 2.5e-10 68.6 77 44.2
TAR625G0600 Trochodendron aralioides HOM05D000033 ORTHO05D001317 4.2e-10 67.8 79 46.8
Potri.018G002600 Populus trichocarpa HOM05D000033 ORTHO05D001317 1.6e-09 65.9 78 46.2
Atru.chr1.2598 Acer truncatum HOM05D000033 ORTHO05D001317 4.6e-09 64.3 75 45.3
GSVIVG01035571001 Vitis vinifera HOM05D000033 ORTHO05D001317 4.6e-09 64.3 76 43.4
Actinidia25737 Actinidia chinensis HOM05D000033 ORTHO05D001317 6.1e-09 63.9 77 46.8
Cpa.g.sc148.7 Carica papaya HOM05D000033 ORTHO05D001317 6.1e-09 63.9 77 45.5
Lsat_1_v5_gn_6_15301 Lactuca sativa HOM05D000033 ORTHO05D001317 6.1e-09 63.9 76 46.1
TWI75G1166 Tripterygium wilfordii HOM05D000033 ORTHO05D001317 6.1e-09 63.9 70 50.0
CAN.G480.11 Capsicum annuum HOM05D000033 ORTHO05D001317 7.9e-09 63.5 76 39.5
Potri.006G279300 Populus trichocarpa HOM05D000033 ORTHO05D001317 7.9e-09 63.5 72 45.8
PGR031G0702 Punica granatum HOM05D000033 ORTHO05D001317 7.9e-09 63.5 69 50.7
TWI32G1014 Tripterygium wilfordii HOM05D000033 ORTHO05D001317 7.9e-09 63.5 80 45.0
TAR636G1875 Trochodendron aralioides HOM05D000033 ORTHO05D001317 1.0e-08 63.2 77 44.2
Potri.007G002000 Populus trichocarpa HOM05D000033 ORTHO05D001317 1.8e-08 62.4 77 44.2
Potri.014G002700 Populus trichocarpa HOM05D000033 ORTHO05D001317 1.8e-08 62.4 77 44.2
Thecc.06G053800 Theobroma cacao HOM05D000033 ORTHO05D001317 1.8e-08 62.4 76 46.1
Potri.004G170274 Populus trichocarpa HOM05D000033 ORTHO05D001317 2.3e-08 62.0 77 44.2
Sabra18G0003500 Salix brachista HOM05D000033 ORTHO05D001317 2.3e-08 62.0 76 44.7
Sabra18G0004500 Salix brachista HOM05D000033 ORTHO05D001317 2.3e-08 62.0 76 46.1
Sabra18G0004900 Salix brachista HOM05D000033 ORTHO05D001317 2.3e-08 62.0 76 46.1
TWI12G0753 Tripterygium wilfordii HOM05D000033 ORTHO05D001317 2.3e-08 62.0 70 47.1
Actinidia03333 Actinidia chinensis HOM05D000033 ORTHO05D001317 3.0e-08 61.6 77 45.5
CSS0001599 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001317 3.0e-08 61.6 75 42.7
CSS0032906 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001317 3.0e-08 61.6 75 42.7
Duzib192G0331 Durio zibethinus HOM05D000033 ORTHO05D001317 3.9e-08 61.2 56 55.4
PGR031G3528 Punica granatum HOM05D000033 ORTHO05D001317 3.9e-08 61.2 76 46.1
RcHm_v2.0_Chr6g0305321 Rosa chinensis HOM05D000033 ORTHO05D001317 5.1e-08 60.8 76 43.4
CiPaw.02G128100 Carya illinoinensis HOM05D000033 ORTHO05D001317 8.8e-08 60.1 55 60.0
Ciclev10010710m.g Citrus clementina HOM05D000033 ORTHO05D001317 8.8e-08 60.1 76 43.4
Manes.16G138100 Manihot esculenta HOM05D000033 ORTHO05D001317 8.8e-08 60.1 77 45.5
COL.COLO4_38278 Corchorus olitorius HOM05D000033 ORTHO05D001317 1.1e-07 59.7 62 51.6
Dinv38806 Davidia involucrata HOM05D000033 ORTHO05D001317 1.1e-07 59.7 76 44.7
FAN27G1305 Fragaria x ananassa HOM05D000033 ORTHO05D001317 1.1e-07 59.7 76 40.8
HanXRQChr03g0081281 Helianthus annuus HOM05D000033 ORTHO05D001317 1.1e-07 59.7 76 46.1
PGSC0003DMG400029556 Solanum tuberosum HOM05D000033 ORTHO05D001317 1.1e-07 59.7 80 36.2
FvH4_2g36530 Fragaria vesca HOM05D000033 ORTHO05D001317 1.5e-07 59.3 76 42.1
Sabra18G0003900 Salix brachista HOM05D000033 ORTHO05D001317 1.5e-07 59.3 71 47.9
Haze_16218 Corylus avellana HOM05D000163 ORTHO05D000219 2.0e-07 58.9 56 50.0
Gohir.A05G115600 Gossypium hirsutum HOM05D000033 ORTHO05D001317 2.0e-07 58.9 44 63.6
Gohir.D05G116000 Gossypium hirsutum HOM05D000033 ORTHO05D001317 2.0e-07 58.9 44 63.6
Gorai.009G120000 Gossypium raimondii HOM05D000033 ORTHO05D001317 2.0e-07 58.9 44 63.6
Phvul.005G185800 Phaseolus vulgaris HOM05D000033 ORTHO05D001317 2.6e-07 58.5 57 50.9
Sopen08g022800 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-07 58.5 79 36.7
CiPaw.08G021200 Carya illinoinensis HOM05D000033 ORTHO05D001317 3.3e-07 58.2 72 43.1
Solyc08g069170.3 Solanum lycopersicum HOM05D000033 ORTHO05D001317 4.4e-07 57.8 79 36.7
Thecc.09G000100 Theobroma cacao HOM05D000033 ORTHO05D001317 4.4e-07 57.8 77 44.2
DCAR_000678 Daucus carota HOM05D000033 ORTHO05D001317 5.7e-07 57.4 71 45.1
DCAR_004560 Daucus carota HOM05D000033 ORTHO05D001317 5.7e-07 57.4 75 37.3
FAN15G2437 Fragaria x ananassa HOM05D000033 ORTHO05D001317 5.7e-07 57.4 76 40.8
FAN20G0653 Fragaria x ananassa HOM05D000033 ORTHO05D001317 5.7e-07 57.4 76 40.8
Cfa003425 Carpinus fangiana HOM05D000033 ORTHO05D001317 7.4e-07 57.0 56 48.2
CiPaw.01G206600 Carya illinoinensis HOM05D000033 ORTHO05D001317 7.4e-07 57.0 48 56.2
MD08G1125200 Malus domestica HOM05D000033 ORTHO05D001317 7.4e-07 57.0 77 40.3
Sopen07g005970 Solanum pennellii HOM05D000033 ORTHO05D001317 7.4e-07 57.0 55 47.3
Ciclev10013947m.g Citrus clementina HOM05D000033 ORTHO05D001317 9.7e-07 56.6 45 60.0
ECA240G0780 Erigeron canadensis HOM05D000033 ORTHO05D001317 9.7e-07 56.6 76 42.1
Gohir.A10G179400 Gossypium hirsutum HOM05D000033 ORTHO05D001317 9.7e-07 56.6 78 42.3
Manes.06G178600 Manihot esculenta HOM05D000033 ORTHO05D001317 9.7e-07 56.6 51 56.9
Nitab4.5_0000899g0060 Nicotiana tabacum HOM05D000033 ORTHO05D001317 9.7e-07 56.6 56 50.0
Nitab4.5_0008632g0010 Nicotiana tabacum HOM05D000033 ORTHO05D001317 9.7e-07 56.6 56 50.0
Sabra07G0001400 Salix brachista HOM05D000163 ORTHO05D000219 9.7e-07 56.6 74 40.5
Gohir.D10G186100 Gossypium hirsutum HOM05D000033 ORTHO05D001317 1.3e-06 56.2 78 42.3
Lj5A764T25 Lonicera japonica HOM05D000033 ORTHO05D001317 1.3e-06 56.2 75 44.0
Lj5C750T6 Lonicera japonica HOM05D000033 ORTHO05D001317 1.3e-06 56.2 75 44.0
PGSC0003DMG400009561 Solanum tuberosum HOM05D000033 ORTHO05D001317 1.3e-06 56.2 55 47.3
Prupe.1G456800 Prunus persica HOM05D000033 ORTHO05D001317 1.7e-06 55.8 77 41.6
Prupe.3G025500 Prunus persica HOM05D000033 ORTHO05D001317 1.7e-06 55.8 55 52.7
FvH4_6g36540 Fragaria vesca HOM05D000033 ORTHO05D001317 2.2e-06 55.5 69 46.4
Lj7A735T36 Lonicera japonica HOM05D000033 ORTHO05D001317 2.2e-06 55.5 77 39.0
MD15G1104700 Malus domestica HOM05D000033 ORTHO05D001317 2.2e-06 55.5 76 39.5
Actinidia14144 Actinidia chinensis HOM05D000033 ORTHO05D001317 2.8e-06 55.1 76 39.5
arahy.Tifrunner.gnm1.ann1.4LBZ2P Arachis hypogaea HOM05D000033 ORTHO05D001317 2.8e-06 55.1 56 48.2
Cc00_g00120 Coffea canephora HOM05D000033 ORTHO05D001317 3.7e-06 54.7 77 36.4
Peaxi162Scf00213g00940 Petunia axillaris HOM05D000033 ORTHO05D001317 3.7e-06 54.7 75 41.3
FAN02G3278 Fragaria x ananassa HOM05D000033 ORTHO05D001317 4.8e-06 54.3 69 44.9
FAN05G0101 Fragaria x ananassa HOM05D000033 ORTHO05D001317 4.8e-06 54.3 69 44.9
Lalb_Chr24g0392691 Lupinus albus HOM05D000033 ORTHO05D001317 4.8e-06 54.3 58 51.7
Peaxi162Scf00320g00120 Petunia axillaris HOM05D000033 ORTHO05D001317 4.8e-06 54.3 55 45.5
QL05p087399 Quercus lobata HOM05D000033 ORTHO05D001317 4.8e-06 54.3 55 50.9
Solyc07g017230.3 Solanum lycopersicum HOM05D000033 ORTHO05D001317 4.8e-06 54.3 55 45.5
Atru.chr7.891 Acer truncatum HOM05D000033 ORTHO05D001317 6.3e-06 53.9 71 45.1
Cfa013304 Carpinus fangiana HOM05D000033 ORTHO05D001317 6.3e-06 53.9 72 40.3
FAN09G2955 Fragaria x ananassa HOM05D000163 ORTHO05D000219 6.3e-06 53.9 67 46.3
MD09G1167500 Malus domestica HOM05D000033 ORTHO05D001317 6.3e-06 53.9 50 52.0
CAN.G146.1 Capsicum annuum HOM05D000033 ORTHO05D001317 8.2e-06 53.5 69 42.0
Ciclev10010420m.g Citrus clementina HOM05D000033 ORTHO05D001317 8.2e-06 53.5 55 49.1
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 8.2e-06 53.5 74 45.9
Nitab4.5_0000404g0180 Nicotiana tabacum HOM05D000163 ORTHO05D000219 8.2e-06 53.5 70 45.7


User provided reference genes

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