Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 6.8e-54 213.8 111 100.0
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.0e-53 212.2 111 99.1
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.0e-53 212.2 111 99.1
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.0e-53 212.2 111 99.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 9.9e-53 209.9 111 98.2
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-50 203.0 111 95.5
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 3.0e-49 198.4 115 92.2
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 6.6e-49 197.2 114 92.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-47 192.6 111 90.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.1e-47 192.2 114 88.6
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.1e-46 189.9 114 88.6
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 4.0e-46 188.0 111 90.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.9e-44 181.8 114 86.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.9e-44 181.8 114 86.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 82.5
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.5e-42 174.9 112 84.8
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-41 172.9 97 92.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.7e-41 172.6 114 80.7
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.1e-40 169.9 114 77.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.1e-40 169.9 114 77.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 4.3e-40 167.9 114 78.1
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.6e-40 167.5 113 77.9
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 76.3
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 77.2
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.6e-39 166.0 114 74.6
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.6e-39 166.0 114 74.6
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.6e-39 166.0 113 76.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.1e-39 165.6 111 77.5
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.8e-39 165.2 114 77.2
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.6e-39 164.9 114 75.4
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.6e-39 164.9 114 75.4
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 6.2e-39 164.1 114 77.2
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 8.1e-39 163.7 114 73.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.8e-38 162.5 114 74.6
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.8e-38 162.5 114 74.6
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 76.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.4e-38 162.2 114 76.3
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 2.4e-38 162.2 114 73.7
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.1e-38 161.8 112 75.0
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 3.1e-38 161.8 112 74.1
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 3.1e-38 161.8 114 76.3
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.0e-38 161.4 111 76.6
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 4.0e-38 161.4 113 74.3
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 5.3e-38 161.0 114 73.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 6.9e-38 160.6 115 73.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 6.9e-38 160.6 115 73.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.9e-38 160.6 115 73.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.9e-38 160.6 115 73.0
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.9e-38 160.6 114 73.7
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.9e-38 160.6 114 73.7
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 9.0e-38 160.2 114 71.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 9.0e-38 160.2 113 72.6
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 75.4
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 75.0
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 77.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.5e-37 159.5 110 75.5
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.0e-37 159.1 112 72.3
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.0e-37 159.1 114 72.8
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.6e-37 158.7 115 73.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.6e-37 158.7 112 72.3
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.4e-37 158.3 115 74.8
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-37 157.9 114 72.8
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-37 157.9 114 72.8
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 5.8e-37 157.5 114 71.9
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.8e-37 157.5 114 72.8
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 7.6e-37 157.1 112 74.1
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 7.6e-37 157.1 109 74.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 7.6e-37 157.1 112 73.2
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 7.6e-37 157.1 115 71.3
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 7.6e-37 157.1 114 72.8
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.6e-37 157.1 112 73.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 9.9e-37 156.8 105 77.1
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 9.9e-37 156.8 114 71.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 9.9e-37 156.8 114 71.9
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 9.9e-37 156.8 114 71.9
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.3e-36 156.4 106 76.4
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.7e-36 156.0 115 70.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 70.5
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.2e-36 155.6 114 71.9
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.2e-36 155.6 115 70.4
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.9e-36 155.2 112 72.3
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 3.8e-36 154.8 114 71.9
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 4.9e-36 154.5 110 72.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 4.9e-36 154.5 104 76.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 4.9e-36 154.5 114 69.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 6.4e-36 154.1 113 70.8
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 6.4e-36 154.1 105 75.2
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 6.4e-36 154.1 115 70.4
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 8.4e-36 153.7 114 69.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-35 153.3 115 68.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.4e-35 152.9 112 72.3
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.4e-35 152.1 104 76.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.4e-35 152.1 114 70.2
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.4e-35 152.1 115 68.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.4e-35 152.1 114 71.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.2e-35 151.8 113 69.0
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.2e-35 151.8 113 69.0
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.2e-35 151.8 112 71.4
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 4.2e-35 151.4 114 70.2
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.4e-35 151.0 113 67.3
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 5.4e-35 151.0 114 68.4
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.1e-34 149.1 115 73.0
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.7e-34 148.7 110 71.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 6.0e-34 147.5 113 69.0
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 7.9e-34 147.1 114 67.5
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 3.0e-33 145.2 113 67.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.0e-33 145.2 107 69.2
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.1e-33 144.4 146 57.5
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 6.7e-33 144.1 104 73.1
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-32 142.5 74 97.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.9e-32 142.5 142 57.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.5e-32 142.1 88 80.7
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 5.6e-32 141.0 80 87.5
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 7.4e-32 140.6 145 56.6
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-31 138.7 74 94.6
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.8e-31 138.7 79 86.1
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.7e-31 138.3 113 62.8
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-30 136.0 113 62.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 5.3e-30 134.4 99 70.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 6.9e-30 134.0 80 82.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.2e-28 129.0 113 60.2
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.8e-28 128.3 92 72.8
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.9e-27 125.9 80 78.8
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.9e-27 125.9 80 78.8
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.2e-27 125.2 106 62.3
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.1e-25 117.9 94 68.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.5e-24 116.3 65 87.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-24 114.0 68 82.4
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-22 110.2 97 63.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.1e-22 110.2 77 68.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.1e-22 108.6 103 52.4
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 5.3e-22 107.8 103 55.3
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.9e-19 99.4 92 60.9
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.1e-18 95.9 96 53.1
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.3e-17 93.2 69 68.1
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.8e-17 92.8 96 61.5
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.8e-17 92.8 111 48.6
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.3e-17 92.4 57 82.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.3e-16 88.2 49 87.8
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.3e-16 88.2 80 51.2
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 7.4e-16 87.4 94 59.6
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-15 86.7 109 43.1
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 6.3e-15 84.3 98 51.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.1e-14 81.6 63 69.8
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 9.0e-14 80.5 51 80.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.2e-13 80.1 106 46.2
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 4.5e-13 78.2 50 80.0
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 5.9e-13 77.8 42 92.9
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.6e-13 77.4 106 44.3
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 45 82.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.3e-12 76.6 45 82.2
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 6.5e-12 74.3 48 79.2
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 65 58.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.2e-11 72.0 43 74.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 3.2e-11 72.0 43 79.1
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.2e-11 72.0 43 81.4
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 7.2e-11 70.9 101 42.6
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.4e-11 70.5 57 63.2
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.0e-09 67.0 90 51.1
BolC3t14384H Brassica oleracea HOM05D004600 ORTHO05D005471 9.7e-08 60.5 75 54.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-07 59.3 59 47.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.3e-07 57.8 54 55.6
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.8e-06 56.2 92 40.2


User provided reference genes

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