Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11139 Brassica carinata HOM05D001504 ORTHO05D001394 3.6e-70 268.1 131 100.0
C04p20020 Brassica napus HOM05D001504 ORTHO05D001394 3.6e-70 268.1 131 100.0
BcaC07g40559 Brassica carinata HOM05D001504 ORTHO05D001394 1.2e-57 226.5 127 86.6
BraA09t40697Z Brassica rapa HOM05D001504 ORTHO05D001394 1.1e-53 213.4 109 92.7
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 1.3e-51 206.5 104 94.2
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 5.6e-47 191.0 100 89.0
Sp5g02820 Schrenkiella parvula HOM05D001504 ORTHO05D001394 1.2e-44 183.3 131 67.9
AT3G60400 Arabidopsis thaliana HOM05D001504 ORTHO05D001394 4.4e-44 181.4 131 67.2
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 1.3e-43 179.9 127 72.4
CARHR170720 Cardamine hirsuta HOM05D001504 ORTHO05D001394 3.8e-43 178.3 131 64.9
C09p09970 Brassica napus HOM05D001504 ORTHO05D001394 1.0e-40 170.2 108 81.5
BolC9t53905H Brassica oleracea HOM05D001504 ORTHO05D001394 1.3e-40 169.9 108 80.6
Aa31LG1G21790 Aethionema arabicum HOM05D001504 ORTHO05D001394 6.6e-40 167.5 131 61.8
Carub.0005s2713 Capsella rubella HOM05D001504 ORTHO05D001394 1.1e-39 166.8 130 62.3
THA.LOC104807619 Tarenaya hassleriana HOM05D001504 ORTHO05D001394 1.4e-37 159.8 127 59.1
Thhalv10005866m.g Eutrema salsugineum HOM05D001504 ORTHO05D001394 7.9e-33 144.1 102 67.6
AL5G42650 Arabidopsis lyrata HOM05D001504 ORTHO05D001394 1.0e-32 143.7 103 67.0
Ciclev10024277m.g Citrus clementina HOM05D001504 ORTHO05D001394 1.5e-31 139.8 132 50.8
Thecc.01G392100 Theobroma cacao HOM05D001504 ORTHO05D001394 4.3e-31 138.3 131 51.9
QL04p031168 Quercus lobata HOM05D001504 ORTHO05D001394 5.6e-31 137.9 131 50.4
Nn1g00905 Nelumbo nucifera HOM05D001504 ORTHO05D001394 1.4e-29 133.3 131 46.6
Hma1.2p1_1740F.1_g300030 Hydrangea macrophylla HOM05D001504 ORTHO05D001394 1.8e-29 132.9 131 48.1
Duzib138G1733 Durio zibethinus HOM05D001504 ORTHO05D001394 2.4e-29 132.5 129 49.6
Atru.chr10.165 Acer truncatum HOM05D001504 ORTHO05D001394 4.0e-29 131.7 130 49.2
Gohir.D08G040500 Gossypium hirsutum HOM05D001504 ORTHO05D001394 5.8e-28 127.9 133 47.4
Gorai.004G039400 Gossypium raimondii HOM05D001504 ORTHO05D001394 5.8e-28 127.9 133 47.4
TWI59G0648 Tripterygium wilfordii HOM05D001504 ORTHO05D001394 7.6e-28 127.5 131 48.1
TAR629G1089 Trochodendron aralioides HOM05D001504 ORTHO05D001394 9.9e-28 127.1 131 48.9
CSS0011147 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 1.3e-27 126.7 131 47.3
CiPaw.13G028100 Carya illinoinensis HOM05D001504 ORTHO05D001394 1.3e-27 126.7 131 48.9
Dinv43637 Davidia involucrata HOM05D001504 ORTHO05D001394 1.3e-27 126.7 131 45.0
FAN10G1053 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.9e-27 125.6 132 47.7
FAN10G2602 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.9e-27 125.6 132 47.7
Manes.01G271800 Manihot esculenta HOM05D001504 ORTHO05D001394 2.9e-27 125.6 129 41.9
arahy.Tifrunner.gnm1.ann1.MR7UVE Arachis hypogaea HOM05D002426 ORTHO05D002873 3.8e-27 125.2 131 49.6
Cfa011093 Carpinus fangiana HOM05D001504 ORTHO05D001394 3.8e-27 125.2 131 46.6
Haze_02802 Corylus avellana HOM05D001504 ORTHO05D001394 3.8e-27 125.2 131 46.6
CSS0010311 Camellia sinensis var. sinensis HOM05D001504 ORTHO05D001394 8.4e-27 124.0 131 46.6
Gohir.A08G029700 Gossypium hirsutum HOM05D001504 ORTHO05D001394 8.4e-27 124.0 133 47.4
Ca_08020_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 1.4e-26 123.2 133 49.6
FAN06G0357 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.4e-26 122.5 132 47.0
FAN06G4583 Fragaria x ananassa HOM05D001504 ORTHO05D001394 2.4e-26 122.5 132 47.0
Cpa.g.sc101.32 Carica papaya HOM05D001504 ORTHO05D001394 3.2e-26 122.1 128 45.3
FAN03G1087 Fragaria x ananassa HOM05D001504 ORTHO05D001394 4.2e-26 121.7 132 47.0
Prupe.2G125600 Prunus persica HOM05D001504 ORTHO05D001394 4.2e-26 121.7 131 44.3
PGSC0003DMG400026040 Solanum tuberosum HOM05D001504 ORTHO05D001394 5.5e-26 121.3 129 45.7
Actinidia12655 Actinidia chinensis HOM05D001504 ORTHO05D001394 2.1e-25 119.4 131 45.8
COL.COLO4_12432 Corchorus olitorius HOM05D001504 ORTHO05D001394 2.1e-25 119.4 131 45.0
Lj7A543T35 Lonicera japonica HOM05D001504 ORTHO05D001394 2.7e-25 119.0 131 44.3
Sopen01g036280 Solanum pennellii HOM05D001504 ORTHO05D001394 2.7e-25 119.0 128 46.1
Solyc01g090490.1 Solanum lycopersicum HOM05D001504 ORTHO05D001394 3.5e-25 118.6 129 45.7
Sc25g0000030 Simmondsia chinensis HOM05D001504 ORTHO05D001394 7.9e-25 117.5 132 43.2
DCAR_025073 Daucus carota HOM05D001504 ORTHO05D001394 1.0e-24 117.1 128 43.8
Actinidia12657 Actinidia chinensis HOM05D001504 ORTHO05D001394 2.3e-24 115.9 131 45.0
MD09G1283700 Malus domestica HOM05D001504 ORTHO05D001394 2.3e-24 115.9 131 42.0
Lj1g0016624 Lotus japonicus HOM05D001504 ORTHO05D001394 3.0e-24 115.5 133 48.1
Oeu035668.1 Olea europaea HOM05D001504 ORTHO05D001394 3.0e-24 115.5 127 47.2
CANSAT11G0282 Cannabis sativa HOM05D001504 ORTHO05D001394 5.1e-24 114.8 132 42.4
MD00G1041100 Malus domestica HOM05D001504 ORTHO05D001394 8.7e-24 114.0 130 44.6
CAN.G362.14 Capsicum annuum HOM05D001504 ORTHO05D001394 1.1e-23 113.6 131 42.7
arahy.Tifrunner.gnm1.ann1.CKY0R5 Arachis hypogaea HOM05D001504 ORTHO05D001394 4.3e-23 111.7 131 45.8
Medtr7g080620 Medicago truncatula HOM05D001504 ORTHO05D001394 5.6e-23 111.3 135 44.4
CANSAT35G0026 Cannabis sativa HOM05D001504 ORTHO05D001394 7.4e-23 110.9 132 41.7
arahy.Tifrunner.gnm1.ann1.EKL24D Arachis hypogaea HOM05D001504 ORTHO05D001394 4.8e-22 108.2 132 43.9
Sabra14G0032700 Salix brachista HOM05D001504 ORTHO05D001394 6.2e-22 107.8 128 43.0
Potri.014G044900 Populus trichocarpa HOM05D001504 ORTHO05D001394 1.1e-21 107.1 128 43.0
Lalb_Chr13g0290471 Lupinus albus HOM05D001504 ORTHO05D001394 1.8e-21 106.3 131 43.5
Ca_14053_v3 Cicer arietinum L. HOM05D001504 ORTHO05D001394 3.1e-21 105.5 132 43.2
Lj3g0023415 Lotus japonicus HOM05D001504 ORTHO05D001394 3.1e-21 105.5 134 43.3
Sed0024200 Sechium edule HOM05D001504 ORTHO05D001394 6.9e-21 104.4 131 39.7
MSTRG.28157 Avicennia marina HOM05D001504 ORTHO05D001394 1.2e-20 103.6 127 41.7
Peaxi162Scf00392g00028 Petunia axillaris HOM05D001504 ORTHO05D001394 1.2e-20 103.6 128 41.4
Psat4g225480 Pisum sativum HOM05D001504 ORTHO05D001394 2.0e-20 102.8 134 41.8
Migut.N01753 Erythranthe guttata HOM05D001504 ORTHO05D001394 4.5e-20 101.7 127 40.2
Migut.O00538 Erythranthe guttata HOM05D001504 ORTHO05D001394 5.8e-20 101.3 127 40.2
TPR.G33114 Trifolium pratense HOM05D001504 ORTHO05D001394 1.0e-19 100.5 134 41.0
EL10Ac1g00788 Beta vulgaris HOM05D001504 ORTHO05D001394 1.7e-19 99.8 132 34.8
PGR042G1724 Punica granatum HOM05D001504 ORTHO05D001394 1.7e-19 99.8 129 41.1
FvH4_7g09760 Fragaria vesca HOM05D001504 ORTHO05D001394 2.9e-19 99.0 132 40.9
Nitab4.5_0002874g0060 Nicotiana tabacum HOM05D001504 ORTHO05D001394 4.9e-19 98.2 131 40.5
Nitab4.5_0003553g0100 Nicotiana tabacum HOM05D001504 ORTHO05D001394 8.4e-19 97.4 131 40.5
RcHm_v2.0_Chr1g0346761 Rosa chinensis HOM05D001504 ORTHO05D001394 8.4e-19 97.4 131 38.9
CDE05G0738 Ceratophyllum demersum HOM05D001504 ORTHO05D001394 1.4e-18 96.7 131 39.7
Medtr8g005155 Medicago truncatula HOM05D001504 ORTHO05D001394 2.5e-18 95.9 134 38.8
HPP92_006119 Vanilla planifolia HOM05D001504 ORTHO05D001394 5.5e-18 94.7 130 35.4
VMungo0331G1862 Vigna mungo HOM05D001504 ORTHO05D001394 5.5e-18 94.7 133 42.1
Ah.05g173140 Amaranthus hybridus HOM05D001504 ORTHO05D001394 7.1e-18 94.4 132 34.1
AUR62013723 Chenopodium quinoa HOM05D001504 ORTHO05D001394 7.1e-18 94.4 133 33.8
Sed0013978 Sechium edule HOM05D001504 ORTHO05D001394 9.3e-18 94.0 128 39.1
Cpa.g.sc6.426 Carica papaya HOM05D001830 ORTHO05D001394 3.5e-17 92.0 125 39.2
SalBow5G3598 Salvia bowleyana HOM05D001504 ORTHO05D001394 3.5e-17 92.0 127 37.0
AUR62023431 Chenopodium quinoa HOM05D001504 ORTHO05D001394 6.0e-17 91.3 133 33.1
Phvul.010G052250 Phaseolus vulgaris HOM05D001504 ORTHO05D001394 7.9e-17 90.9 136 38.2
Lsat_1_v5_gn_2_27920 Lactuca sativa HOM05D001504 ORTHO05D001394 1.0e-16 90.5 126 31.7
Glyma.03G114500 Glycine max HOM05D001504 ORTHO05D001394 3.0e-16 89.0 138 39.1
unitig_578.g16713 Utricularia gibba HOM05D001504 ORTHO05D001394 3.0e-16 89.0 121 36.4
ECA233G5731 Erigeron canadensis HOM05D001504 ORTHO05D001394 8.7e-16 87.4 126 32.5
Glyma.07G112100 Glycine max HOM05D001504 ORTHO05D001394 1.9e-15 86.3 137 38.0
HanXRQChr10g0288521 Helianthus annuus HOM05D001504 ORTHO05D001394 1.3e-14 83.6 123 31.7
Aqoxy3G02795 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 2.6e-12 75.9 95 42.1
Aqoxy3G02800 Aquilegia oxysepala HOM05D001504 ORTHO05D001394 5.0e-11 71.6 95 40.0
Zm00001eb321620 Zea mays HOM05D001504 ORTHO05D001394 2.5e-07 59.3 128 25.8


User provided reference genes

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