Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.3e-62 241.1 120 100.0
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.3e-62 241.1 120 100.0
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-57 226.1 148 81.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.9e-55 218.0 136 81.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.1e-55 217.6 136 80.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 5.1e-55 217.6 136 81.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.3e-54 214.5 136 80.1
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 9.7e-54 213.4 136 80.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-53 213.0 136 80.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-53 213.0 136 80.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.3e-53 213.0 136 79.4
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.8e-53 211.1 106 100.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.2e-51 206.5 136 75.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.3e-50 203.0 136 74.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.8e-50 201.4 136 75.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.0e-50 201.1 136 74.3
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.0e-50 201.1 136 74.3
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.4e-49 199.5 136 70.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 9.4e-49 196.8 136 69.9
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.1e-48 195.7 136 70.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.1e-48 195.7 136 70.6
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.7e-48 195.3 136 69.1
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.6e-48 194.5 136 68.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.9e-48 193.7 136 69.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.4e-47 193.0 136 69.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.3e-47 192.2 136 70.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 5.1e-47 191.0 135 69.6
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.1e-47 191.0 136 69.9
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 5.1e-47 191.0 136 69.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.1e-47 191.0 136 67.6
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 6.7e-47 190.7 136 69.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.1e-46 189.9 135 69.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.5e-46 189.5 136 70.6
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.0e-46 189.1 135 69.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.0e-46 189.1 136 67.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-46 189.1 136 68.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.3e-46 188.3 136 69.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.7e-46 187.6 136 69.9
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.7e-46 187.6 136 68.4
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.4e-46 187.2 136 67.6
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.4e-46 187.2 136 69.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.4e-46 187.2 136 69.9
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.4e-46 187.2 136 69.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.3e-45 186.4 135 66.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.2e-45 185.7 136 68.4
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.2e-45 185.7 136 69.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.8e-45 185.3 135 67.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.8e-45 185.3 136 66.9
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.8e-45 185.3 136 67.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.7e-45 184.9 136 66.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.7e-45 184.9 136 69.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.7e-45 184.9 136 69.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.7e-45 184.9 136 69.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.7e-45 184.9 136 66.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.8e-45 184.5 136 65.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 4.8e-45 184.5 136 68.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.8e-45 184.5 136 67.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.8e-45 184.5 135 68.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.3e-45 184.1 136 66.2
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 6.3e-45 184.1 136 66.2
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 8.2e-45 183.7 136 66.9
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-44 183.3 136 66.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.1e-44 183.3 136 68.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.1e-44 183.3 136 68.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.1e-44 183.3 136 68.4
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.1e-44 183.3 136 66.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.4e-44 183.0 136 68.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.4e-44 183.0 135 67.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.8e-44 182.6 159 60.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-44 182.6 136 64.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.4e-44 182.2 136 66.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.1e-44 181.8 136 65.4
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.1e-44 181.8 136 66.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.1e-44 181.8 136 68.4
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 4.1e-44 181.4 136 64.7
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 5.3e-44 181.0 136 66.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 9.1e-44 180.3 136 62.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.1e-44 180.3 136 64.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.2e-43 179.9 136 64.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.2e-43 179.9 136 66.2
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.9e-43 177.6 136 65.4
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.9e-43 177.6 136 64.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.0e-42 176.8 135 64.4
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.0e-42 176.8 136 66.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.0e-42 176.8 119 77.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.7e-42 176.0 136 63.2
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-42 176.0 119 73.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.7e-42 176.0 135 65.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 3.8e-42 174.9 136 64.0
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.4e-41 172.9 125 67.2
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.5e-41 172.2 135 63.7
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.5e-41 172.2 119 73.1
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.5e-41 172.2 136 62.5
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.4e-41 170.2 135 61.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-40 169.9 136 60.3
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.6e-40 169.5 136 62.5
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.7e-40 168.7 168 54.8
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.7e-40 168.7 135 61.5
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.7e-40 168.7 135 61.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 6.1e-40 167.5 136 60.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 7.9e-40 167.2 135 59.3
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.9e-40 167.2 135 60.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-39 166.8 132 65.9
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-39 166.8 168 54.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.4e-39 166.4 135 59.3
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.3e-39 165.6 136 61.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.0e-39 165.2 186 50.5
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.9e-39 164.9 135 60.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.1e-38 163.3 132 62.1
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.1e-38 163.3 135 61.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.4e-38 161.4 119 67.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.4e-38 160.6 182 51.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.2e-37 159.1 124 66.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 4.8e-37 157.9 122 66.4
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.3e-36 154.5 122 64.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.0e-35 152.5 126 59.5
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.5e-35 151.8 106 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.2e-34 149.1 135 54.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.0e-34 147.9 156 53.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.5e-33 144.4 133 55.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.6e-32 141.7 104 66.3
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 6.1e-32 141.0 108 65.7
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.8e-31 139.4 104 67.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.5e-30 136.3 136 51.5
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.4e-30 134.8 112 61.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.4e-30 134.8 135 48.9
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.8e-29 132.1 116 56.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 8.2e-29 130.6 100 66.0
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-27 126.7 111 59.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.0e-26 123.6 135 45.9
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.7e-24 115.5 133 45.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.0e-24 114.0 87 63.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.3e-23 112.5 147 41.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 8.3e-21 104.0 54 85.2
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.6e-19 99.8 54 79.6
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-19 99.4 56 78.6
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.0e-19 99.4 66 69.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.5e-19 98.6 54 79.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 2.7e-16 89.0 81 50.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.6e-16 88.6 129 36.4
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 8.3e-13 77.4 41 85.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.7e-11 72.4 114 37.7
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 8.6e-10 67.4 54 48.1
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-09 67.0 131 29.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.5e-09 65.9 123 31.7
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.5e-06 56.6 93 37.6


User provided reference genes

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