Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.0e-37 157.5 76 100.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-30 135.6 70 94.3
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-27 124.8 88 72.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-27 124.8 88 72.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.9e-27 124.8 88 72.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.7e-27 124.4 88 72.7
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.7e-27 124.4 63 98.4
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.7e-27 124.4 88 72.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.7e-27 124.4 88 72.7
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 6.4e-27 123.6 88 71.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 6.4e-27 123.6 82 76.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.4e-26 122.5 88 70.5
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.4e-26 121.7 88 70.5
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-26 121.3 94 66.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 7.0e-26 120.2 94 64.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-25 118.2 83 72.3
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-24 115.5 93 62.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.3e-24 115.2 93 64.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 3.9e-24 114.4 93 61.3
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.0e-24 114.0 82 69.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.0e-24 114.0 82 69.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.1e-23 112.8 93 60.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.1e-23 112.8 93 63.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.5e-23 112.5 94 61.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.5e-23 112.5 82 69.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.5e-23 112.5 93 60.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.5e-23 112.5 82 68.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.9e-23 112.1 93 61.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.9e-23 112.1 93 62.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.9e-23 112.1 93 62.4
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.9e-23 112.1 82 68.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.9e-23 112.1 82 64.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.9e-23 112.1 93 62.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.9e-23 112.1 82 68.3
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.9e-23 112.1 83 65.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 2.5e-23 111.7 82 67.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.5e-23 111.7 93 62.4
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.5e-23 111.7 91 59.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.3e-23 111.3 82 67.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.3e-23 110.9 94 61.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.3e-23 110.9 93 61.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.3e-23 110.9 93 61.3
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.3e-23 110.9 85 63.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 5.6e-23 110.5 93 59.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 5.6e-23 110.5 93 59.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.6e-23 110.5 88 61.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 7.3e-23 110.2 82 64.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 7.3e-23 110.2 82 64.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.3e-23 110.2 93 61.3
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 7.3e-23 110.2 82 65.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 7.3e-23 110.2 93 60.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 7.3e-23 110.2 82 63.4
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.3e-23 110.2 82 63.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.3e-23 110.2 88 62.5
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 7.3e-23 110.2 82 64.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 9.5e-23 109.8 88 62.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.5e-23 109.8 94 58.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-22 109.4 93 61.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.2e-22 109.4 93 61.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.2e-22 109.4 82 63.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.2e-22 109.4 82 64.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.6e-22 109.0 82 62.2
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.6e-22 109.0 93 60.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.6e-22 109.0 93 61.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-22 109.0 88 60.2
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.6e-22 109.0 88 61.4
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.6e-22 109.0 83 66.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.6e-22 109.0 82 63.4
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.6e-22 109.0 82 63.4
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.1e-22 108.6 88 59.1
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-22 108.6 88 62.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.1e-22 108.6 82 64.6
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.1e-22 108.6 94 58.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.8e-22 108.2 82 62.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.8e-22 108.2 95 57.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.8e-22 108.2 82 63.4
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.6e-22 107.8 82 64.6
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 3.6e-22 107.8 88 60.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.7e-22 107.5 82 62.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 4.7e-22 107.5 82 63.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.7e-22 107.5 88 59.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.7e-22 107.5 88 60.2
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.2e-22 107.1 82 63.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.2e-22 107.1 61 82.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.2e-22 107.1 82 63.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 6.2e-22 107.1 82 63.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.2e-22 107.1 83 61.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.2e-22 107.1 93 59.1
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.2e-22 107.1 82 64.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 8.1e-22 106.7 82 62.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 8.1e-22 106.7 82 62.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 8.1e-22 106.7 82 62.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 8.1e-22 106.7 88 59.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.1e-21 106.3 88 58.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.4e-21 105.9 82 62.2
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.8e-21 105.5 93 58.1
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.8e-21 105.5 82 63.4
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.8e-21 105.5 82 61.0
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.3e-21 105.1 88 59.1
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-21 105.1 82 59.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 3.1e-21 104.8 88 60.2
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.1e-21 104.8 82 63.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 8.9e-21 103.2 55 85.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.0e-20 102.1 88 58.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.6e-20 101.7 93 54.8
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.6e-20 101.7 88 55.7
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.6e-20 101.7 88 55.7
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.6e-20 101.7 88 55.7
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.4e-20 101.3 88 58.0
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-19 99.4 55 81.8
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.7e-19 97.8 75 66.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.4e-19 97.1 88 53.4
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.4e-18 95.9 88 50.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-18 95.5 63 71.4
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.4e-18 95.1 61 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 7.1e-18 93.6 88 52.3
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 9.2e-18 93.2 62 71.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.7e-17 91.7 82 54.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 7.8e-17 90.1 58 74.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.0e-16 88.2 91 45.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.8e-14 81.6 85 44.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.8e-13 79.0 93 47.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.1e-13 78.2 82 47.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 5.2e-13 77.4 63 61.9
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 4.4e-12 74.3 88 42.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-10 68.9 75 50.7
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 7.1e-10 67.0 81 43.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 7.1e-10 67.0 65 52.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 7.1e-10 67.0 87 43.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.5e-09 64.7 54 50.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.0e-08 63.2 56 53.6
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.1e-08 60.8 56 51.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.5e-07 58.5 56 48.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-06 56.2 32 71.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.1e-06 55.5 39 74.4


User provided reference genes

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