Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 3.3e-29 131.0 63 100.0
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 2.7e-23 111.3 63 85.7
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 2.7e-23 111.3 63 85.7
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 2.7e-23 111.3 63 85.7
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 1.0e-14 82.8 46 80.4
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 3.9e-14 80.9 46 78.3
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.1e-13 79.3 46 76.1
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.9e-13 78.6 46 76.1
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 3.3e-13 77.8 46 73.9
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 4.3e-13 77.4 46 71.7
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 4.3e-13 77.4 46 73.9
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 7.4e-13 76.6 46 71.7
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 7.4e-13 76.6 46 71.7
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 7.4e-13 76.6 46 71.7
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 7.4e-13 76.6 46 69.6
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 1.3e-12 75.9 46 69.6
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 1.3e-12 75.9 46 71.7
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 1.6e-12 75.5 46 69.6
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 1.6e-12 75.5 46 71.7
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 1.6e-12 75.5 46 71.7
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 2.2e-12 75.1 46 69.6
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.2e-12 75.1 46 69.6
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 2.8e-12 74.7 46 69.6
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 2.8e-12 74.7 46 69.6
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 2.8e-12 74.7 46 69.6
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 2.8e-12 74.7 46 69.6
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 3.7e-12 74.3 46 69.6
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 6.3e-12 73.6 46 69.6
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 8.2e-12 73.2 46 67.4
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 8.2e-12 73.2 46 67.4
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 2.4e-11 71.6 46 67.4
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 4.1e-11 70.9 46 63.0
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 4.1e-11 70.9 46 63.0
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 4.1e-11 70.9 46 63.0
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 4.1e-11 70.9 46 65.2
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 5.3e-11 70.5 46 67.4
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.1e-11 69.7 47 68.1
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 1.2e-10 69.3 46 65.2
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 65.2
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 65.2
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 65.2
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 63.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 63.0
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 1.5e-10 68.9 46 67.4
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 2.6e-10 68.2 53 54.7
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 2.6e-10 68.2 46 63.0
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 63.0
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 63.0
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 63.0
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 60.9
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 60.9
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 63.0
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 63.0
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.4e-10 67.8 46 65.2
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 58.7
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 63.0
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 63.0
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 60.9
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 60.9
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 60.9
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 4.5e-10 67.4 46 58.7
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 56.5
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 56.5
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 60.9
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 63.0
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 60.9
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 5.9e-10 67.0 46 60.9
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 7.7e-10 66.6 53 50.9
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 7.7e-10 66.6 46 63.0
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.7e-10 66.6 46 60.9
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 1.0e-09 66.2 46 60.9
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 1.0e-09 66.2 46 58.7
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 1.0e-09 66.2 46 63.0
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.0e-09 66.2 46 60.9
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 1.3e-09 65.9 46 60.9
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 1.3e-09 65.9 46 58.7
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 1.3e-09 65.9 46 58.7
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 1.3e-09 65.9 46 65.2
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.3e-09 65.9 46 58.7
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.7e-09 65.5 46 58.7
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.7e-09 65.5 46 60.9
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.7e-09 65.5 46 60.9
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 1.7e-09 65.5 46 60.9
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 1.7e-09 65.5 46 58.7
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 2.2e-09 65.1 46 58.7
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 2.2e-09 65.1 46 58.7
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 2.2e-09 65.1 46 58.7
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 2.2e-09 65.1 46 58.7
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 2.2e-09 65.1 46 60.9
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 2.9e-09 64.7 46 60.9
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 2.9e-09 64.7 46 63.0
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 2.9e-09 64.7 46 56.5
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 2.9e-09 64.7 46 58.7
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 2.9e-09 64.7 46 60.9
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 3.8e-09 64.3 46 56.5
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 3.8e-09 64.3 46 60.9
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 6.5e-09 63.5 46 58.7
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 6.5e-09 63.5 46 58.7
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 6.5e-09 63.5 46 56.5
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 56.5
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 8.5e-09 63.2 47 59.6
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 58.7
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 56.5
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 56.5
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 60.9
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 8.5e-09 63.2 46 56.5
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 56.5
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 58.7
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 58.7
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 54.3
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 56.5
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 1.1e-08 62.8 46 56.5
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 1.4e-08 62.4 46 56.5
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 1.4e-08 62.4 46 54.3
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.4e-08 62.4 46 58.7
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.4e-08 62.4 46 56.5
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 1.4e-08 62.4 46 56.5
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 1.4e-08 62.4 47 59.6
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.9e-08 62.0 46 54.3
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 2.5e-08 61.6 46 56.5
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 3.2e-08 61.2 46 52.2
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 4.2e-08 60.8 56 46.4
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 4.2e-08 60.8 46 56.5
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 5.5e-08 60.5 46 54.3
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 7.2e-08 60.1 46 54.3
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 7.2e-08 60.1 53 45.3
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 7.2e-08 60.1 46 54.3
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 9.4e-08 59.7 46 50.0
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 9.4e-08 59.7 46 50.0
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 1.2e-07 59.3 48 62.5
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 1.2e-07 59.3 48 62.5
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.2e-07 59.3 46 56.5
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 1.2e-07 59.3 46 54.3
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 1.6e-07 58.9 46 52.2
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 1.6e-07 58.9 47 53.2
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 1.6e-07 58.9 46 50.0
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 2.1e-07 58.5 46 50.0
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 2.7e-07 58.2 46 52.2
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 3.6e-07 57.8 49 55.1
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.6e-07 57.8 49 55.1
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 3.6e-07 57.8 41 65.9
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 4.6e-07 57.4 52 51.9
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 1.4e-06 55.8 41 56.1
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 1.4e-06 55.8 53 47.2
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 2.3e-06 55.1 46 56.5
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 3.0e-06 54.7 46 50.0
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 3.0e-06 54.7 50 50.0
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 5.1e-06 53.9 71 39.4
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 6.7e-06 53.5 46 45.7
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 8.8e-06 53.1 46 43.5


User provided reference genes

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