Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 0.0e+00 1624.4 853 100.0
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 0.0e+00 1542.3 855 96.0
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 0.0e+00 1539.2 855 95.1
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 0.0e+00 1533.5 855 94.6
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 1.8e-242 843.2 453 98.9
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 3.3e-196 689.5 395 92.7
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 3.5e-190 669.5 458 84.5
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 8.3e-184 648.3 399 90.0
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 9.3e-159 565.1 486 68.7
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.7e-150 537.0 489 65.8
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.5e-148 531.2 487 65.5
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 5.7e-148 529.3 491 64.8
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 1.2e-145 521.5 485 64.3
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 2.1e-142 510.8 481 63.8
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.5e-140 504.6 493 63.3
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.6e-139 501.1 483 63.8
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 6.7e-133 479.2 473 62.4
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 2.6e-124 450.7 478 61.5
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 2.6e-124 450.7 432 64.6
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.6e-105 388.3 612 46.4
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 7.0e-90 336.3 502 47.0
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 2.5e-87 327.8 502 46.4
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 7.3e-87 326.2 488 46.5
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 9.5e-87 325.9 457 50.1
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 3.1e-85 320.9 485 46.8
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 5.2e-85 320.1 486 47.9
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 5.2e-85 320.1 462 49.8
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 5.2e-85 320.1 453 49.9
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 4.4e-84 317.0 429 51.3
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 1.3e-83 315.5 429 51.3
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 1.1e-82 312.4 432 51.2
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.9e-79 301.6 430 50.9
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 1.6e-78 298.5 423 49.2
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 8.4e-27 126.7 517 27.1
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 1.6e-25 122.5 205 34.6
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 3.9e-24 117.9 252 33.3
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.6e-20 105.1 406 27.1
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 2.5e-18 98.6 213 35.7
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 3.9e-16 91.3 198 34.3
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 8.8e-16 90.1 418 25.6
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 2.0e-15 89.0 211 31.3
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.5e-15 88.6 211 29.4
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 1.7e-14 85.9 455 24.8
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.2e-14 85.5 211 30.3
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.4e-13 82.8 494 24.9
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 2.4e-13 82.0 212 33.0
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 3.1e-13 81.6 194 29.9
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 4.5e-12 77.8 195 30.8
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 1.1e-10 73.2 415 26.5
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 1.1e-10 73.2 401 27.7
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 3.2e-10 71.6 220 29.1
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 7.2e-10 70.5 192 28.1
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 9.4e-10 70.1 154 37.0
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.2e-09 69.7 319 27.9
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 1.6e-09 69.3 458 24.7
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 7.9e-09 67.0 206 26.2
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 5.1e-08 64.3 302 27.5
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 2.6e-07 62.0 180 27.8
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 2.6e-07 62.0 226 30.5
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 9.7e-07 60.1 208 28.4
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 9.7e-07 60.1 416 24.3
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 4.8e-06 57.8 205 27.8
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 8.2e-06 57.0 192 25.5


User provided reference genes

Program Settings