Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 2.1e-42 175.3 88 100.0
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 6.7e-36 153.7 88 92.0
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 1.9e-30 135.6 65 100.0
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 6.0e-29 130.6 65 95.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.5e-24 115.9 113 61.9
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.0e-24 115.5 113 61.9
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.0e-24 115.5 113 61.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.6e-24 115.2 113 61.9
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 3.4e-24 114.8 116 59.5
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 5.8e-24 114.0 113 61.1
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 5.8e-24 114.0 113 61.1
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 7.6e-24 113.6 113 61.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.0e-23 113.2 113 61.1
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.3e-23 112.8 116 58.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.7e-23 112.5 113 60.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.9e-23 111.7 113 61.1
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 4.9e-23 110.9 113 59.3
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 6.5e-23 110.5 113 60.2
C04p27960 Brassica napus HOM05D004999 ORTHO05D024529 6.5e-23 110.5 56 94.6
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.9e-22 109.0 111 59.5
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.9e-22 109.0 116 57.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 9.3e-22 106.7 116 55.2
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 9.3e-22 106.7 117 58.1
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.6e-21 104.4 116 54.3
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.0e-20 103.2 112 56.2
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 3.0e-20 101.7 84 71.4
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.4e-17 92.0 112 50.0
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.2e-16 89.7 112 50.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.6e-16 88.6 113 51.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.0e-15 86.7 112 49.1
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.7e-15 85.9 112 50.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.2e-15 85.5 112 49.1
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 6.5e-15 84.0 79 60.8
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 8.5e-15 83.6 79 60.8
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.4e-14 82.8 112 45.5
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-14 82.8 112 48.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.2e-14 81.6 111 48.6
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 5.5e-14 80.9 112 47.3
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 5.5e-14 80.9 111 47.7
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 5.5e-14 80.9 111 47.7
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 7.2e-14 80.5 111 46.8
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 7.2e-14 80.5 111 46.8
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 7.2e-14 80.5 111 45.9
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 7.2e-14 80.5 111 46.8
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 9.4e-14 80.1 78 60.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 9.4e-14 80.1 108 50.0
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.2e-13 79.7 110 47.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.6e-13 79.3 108 50.0
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.1e-13 79.0 108 50.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.7e-13 78.6 75 60.0
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.7e-13 78.6 111 45.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.6e-13 78.2 108 50.0
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.6e-13 78.2 112 44.6
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 4.6e-13 77.8 112 44.6
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.6e-13 77.8 111 45.0
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 6.1e-13 77.4 112 47.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 6.1e-13 77.4 114 44.7
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 7.9e-13 77.0 111 44.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.0e-12 76.6 74 58.1
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.8e-12 75.9 115 44.3
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.8e-12 75.9 78 57.7
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.8e-12 75.9 112 46.4
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.3e-12 75.5 114 43.0
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.3e-12 75.5 118 44.9
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.0e-12 75.1 107 45.8
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.0e-12 75.1 108 46.3
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 3.9e-12 74.7 108 46.3
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 3.9e-12 74.7 111 43.2
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.1e-12 74.3 112 42.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 5.1e-12 74.3 111 45.0
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 6.7e-12 73.9 112 42.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 6.7e-12 73.9 112 42.9
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 6.7e-12 73.9 111 42.3
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.7e-12 73.9 108 46.3
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 6.7e-12 73.9 112 44.6
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 8.8e-12 73.6 105 46.7
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 8.8e-12 73.6 112 42.9
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 1.1e-11 73.2 114 43.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-11 73.2 108 46.3
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.1e-11 73.2 117 43.6
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.1e-11 73.2 108 44.4
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.5e-11 72.8 112 42.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.0e-11 72.4 116 42.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 2.0e-11 72.4 112 42.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 2.5e-11 72.0 105 46.7
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.3e-11 71.6 112 42.0
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 4.3e-11 71.2 116 43.1
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 5.7e-11 70.9 112 41.1
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 5.7e-11 70.9 111 44.1
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 7.4e-11 70.5 112 42.0
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 7.4e-11 70.5 112 43.8
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 7.4e-11 70.5 108 42.6
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 9.7e-11 70.1 73 57.5
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.3e-10 69.7 128 39.8
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.3e-10 69.7 105 45.7
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.3e-10 69.7 111 43.2
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.3e-10 69.7 108 42.6
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.2e-10 68.9 113 43.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 2.2e-10 68.9 114 43.9
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 3.7e-10 68.2 112 42.0
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 4.8e-10 67.8 111 41.4
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 6.3e-10 67.4 113 43.4
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 6.3e-10 67.4 111 42.3
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 8.2e-10 67.0 108 44.4
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.2e-10 67.0 113 42.5
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.1e-09 66.6 113 41.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.4e-09 66.2 70 52.9
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.8e-09 65.9 111 41.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.4e-09 65.5 77 49.4
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 3.1e-09 65.1 92 46.7
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 3.1e-09 65.1 114 39.5
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 6.9e-09 63.9 76 50.0
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.2e-08 63.2 111 39.6
BcaC02g10518 Brassica carinata HOM05D035158 ORTHO05D021597 1.5e-08 62.8 32 96.9
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.5e-08 61.2 75 50.7
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 7.7e-08 60.5 108 39.8
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.1e-06 56.6 114 38.6
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.1e-06 56.6 103 38.8
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.4e-06 56.2 65 50.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.9e-06 55.8 66 48.5
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.9e-06 55.8 67 47.8
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.2e-06 54.7 115 33.9


User provided reference genes

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