Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 3.1e-162 575.1 293 100.0
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 3.1e-162 575.1 293 100.0
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 3.0e-141 505.4 297 88.2
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 7.7e-137 490.7 297 87.5
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 8.8e-133 477.2 296 85.8
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 1.9e-111 406.4 310 73.9
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 1.5e-103 380.2 329 68.1
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 8.0e-102 374.4 338 65.4
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 5.2e-101 371.7 341 65.7
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 2.8e-99 365.9 327 67.3
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 8.3e-99 364.4 313 69.0
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 5.9e-97 358.2 327 65.7
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 4.2e-95 352.1 315 67.0
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 4.2e-95 352.1 319 67.1
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 7.2e-95 351.3 299 68.2
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 2.8e-91 339.3 327 64.2
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 7.8e-89 331.3 319 64.3
BraA03t11066Z Brassica rapa HOM05D008171 ORTHO05D006541 2.1e-78 296.6 340 56.2
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 4.4e-68 262.3 303 56.1
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 2.0e-20 104.0 291 32.0
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 5.0e-19 99.4 276 31.2
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.5e-18 97.1 291 29.2
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 5.5e-18 95.9 298 28.9
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 5.5e-18 95.9 256 31.6
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 7.2e-18 95.5 298 28.5
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 7.2e-18 95.5 326 30.4
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 2.7e-17 93.6 314 30.3
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 7.9e-17 92.0 229 33.6
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.4e-16 91.3 44 100.0
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 3.9e-16 89.7 291 29.9
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.1e-15 88.2 301 29.6
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 2.5e-15 87.0 242 29.8
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.7e-15 85.9 297 29.0
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 9.7e-15 85.1 237 30.8
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 2.8e-14 83.6 190 33.7
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 3.1e-13 80.1 244 29.9
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 3.4e-12 76.6 207 31.9
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.9e-12 75.9 219 26.9
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 7.7e-12 75.5 232 28.4
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 1.7e-11 74.3 330 27.9
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 2.2e-11 73.9 244 29.5
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 2.9e-11 73.6 133 34.6
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 3.8e-11 73.2 217 29.0
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.4e-10 71.2 233 30.0
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.9e-10 70.9 233 28.3
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 2.5e-10 70.5 237 30.0
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 9.4e-10 68.6 303 28.1
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 9.4e-10 68.6 113 31.9
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 9.4e-10 68.6 272 28.7
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 2.1e-09 67.4 290 27.6
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 2.1e-09 67.4 97 35.1
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 3.6e-09 66.6 324 25.9
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 3.6e-09 66.6 231 30.3
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 3.6e-09 66.6 225 28.9
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 6.1e-09 65.9 123 30.9
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 1.0e-08 65.1 217 31.3
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 1.8e-08 64.3 83 36.1
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 8.8e-08 62.0 112 31.2
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 8.8e-08 62.0 75 33.3
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 1.1e-07 61.6 271 25.1
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 7.4e-07 58.9 258 27.5
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 1.3e-06 58.2 312 26.6
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 2.8e-06 57.0 254 27.6
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 2.8e-06 57.0 310 24.5
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.7e-06 56.6 73 34.2
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 3.7e-06 56.6 113 29.2
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 3.7e-06 56.6 254 26.8
Thhalv10017245m.g Eutrema salsugineum HOM05D012655 ORTHO05D014861 8.2e-06 55.5 261 23.8


User provided reference genes

Program Settings