Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 0.0e+00 1337.4 671 100.0
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 0.0e+00 1327.4 686 97.8
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 0.0e+00 1312.7 671 98.1
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 0.0e+00 1304.3 672 97.6
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 0.0e+00 1236.9 671 93.1
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 0.0e+00 1208.4 672 90.8
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 0.0e+00 1205.7 673 91.2
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 0.0e+00 1201.8 672 90.8
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 0.0e+00 1184.9 673 89.6
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 0.0e+00 1155.2 675 87.6
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 0.0e+00 1150.6 679 85.7
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 0.0e+00 1148.7 672 87.4
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 8.0e-299 1030.0 670 78.7
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 3.2e-287 991.5 634 83.9
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 7.5e-281 970.3 678 76.7
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 8.6e-277 956.8 506 95.8
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.1e-270 935.6 671 73.8
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.1e-263 913.3 528 87.9
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.8e-253 879.4 686 70.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 1.2e-233 813.5 674 64.7
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 4.6e-230 801.6 671 64.8
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.2e-227 792.7 675 63.7
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 6.3e-227 791.2 679 62.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.3e-227 791.2 671 62.7
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 5.3e-226 788.1 457 90.4
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 2.6e-225 785.8 681 62.0
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.4e-225 785.4 682 61.7
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 5.9e-225 784.6 673 61.8
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.8e-224 781.9 670 63.9
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.8e-224 781.9 674 61.6
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 6.5e-224 781.2 677 62.0
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.4e-223 780.0 672 62.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 2.7e-222 775.8 679 61.9
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 6.1e-222 774.6 674 62.3
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.8e-221 773.1 673 62.6
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.6e-220 769.2 676 61.8
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.2e-219 766.1 674 61.7
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.1e-218 763.8 671 62.0
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 1.8e-218 763.1 678 60.2
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-217 760.4 675 60.7
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.2e-217 760.4 669 61.0
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.0e-217 759.6 675 60.9
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 5.9e-217 758.1 652 66.3
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 7.7e-217 757.7 669 61.3
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 7.2e-215 751.1 674 59.8
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.2e-214 750.4 686 59.6
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.0e-213 747.3 675 59.9
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 5.2e-213 745.0 670 61.2
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 2.8e-211 739.2 678 59.4
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 4.8e-211 738.4 675 59.3
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 8.2e-211 737.6 682 59.5
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.1e-210 737.3 678 60.3
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.8e-210 736.5 674 59.9
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 4.1e-210 735.3 676 59.3
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 9.1e-210 734.2 673 61.1
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 4.5e-209 731.9 674 59.2
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.9e-207 726.5 672 58.9
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.9e-207 726.5 678 60.0
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 9.4e-207 724.2 676 57.7
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 2.1e-206 723.0 674 58.3
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 1.0e-205 720.7 674 58.5
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 1.0e-205 720.7 674 58.2
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.4e-205 720.3 675 58.5
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 2.3e-205 719.5 685 58.8
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 6.7e-205 718.0 669 59.9
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 2.0e-204 716.5 679 58.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.3e-204 715.7 679 58.2
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 7.5e-204 714.5 680 59.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 2.2e-203 713.0 672 59.1
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 6.3e-203 711.4 679 58.5
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.1e-202 710.7 682 56.7
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 3.1e-202 709.1 674 57.7
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 7.0e-202 708.0 671 57.8
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 7.7e-201 704.5 681 58.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.3e-200 703.7 677 58.5
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 8.5e-200 701.0 677 58.2
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.5e-199 700.3 685 57.7
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.3e-197 693.0 661 59.6
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.3e-197 693.0 671 57.5
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.4e-196 689.1 680 57.5
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 5.7e-196 688.3 676 57.7
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 9.8e-196 687.6 678 57.1
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 4.1e-194 682.2 715 54.4
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 4.1e-194 682.2 674 56.5
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 9.1e-194 681.0 689 56.2
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.6e-193 680.2 670 56.6
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 2.0e-193 679.9 676 56.5
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 3.5e-193 679.1 674 55.3
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.3e-192 677.2 677 57.2
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.7e-192 676.8 691 55.3
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.7e-192 676.8 673 56.0
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 5.0e-192 675.2 675 55.6
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 6.6e-192 674.9 701 56.5
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.5e-191 672.9 659 57.5
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.5e-191 672.9 677 57.0
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 7.2e-191 671.4 677 54.7
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.3e-189 666.4 676 55.8
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 3.0e-189 666.0 672 55.5
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 5.2e-189 665.2 608 60.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 5.7e-188 661.8 690 55.2
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.8e-187 659.4 679 55.7
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 4.9e-187 658.7 581 61.1
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 3.5e-185 652.5 678 55.0
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 1.3e-184 650.6 693 53.1
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.5e-183 647.1 712 52.5
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.5e-183 644.4 676 54.1
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 1.2e-182 644.0 520 66.0
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 2.8e-182 642.9 604 58.4
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.1e-181 639.4 704 52.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 6.8e-181 638.3 716 52.7
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.9e-178 630.2 687 53.3
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 4.1e-178 629.0 677 53.3
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 6.0e-177 625.2 675 53.8
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.5e-175 620.5 694 52.9
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 6.2e-174 615.1 680 52.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 2.4e-170 603.2 707 51.1
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 2.4e-170 603.2 666 53.5
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.3e-168 596.7 659 52.8
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 4.3e-159 565.8 661 50.1
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 2.1e-158 563.5 673 50.4
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 6.2e-158 562.0 661 50.5
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 2.0e-156 557.0 657 50.2
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.6e-156 556.6 666 50.0
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 5.4e-154 548.9 736 45.9
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 4.6e-153 545.8 494 59.9
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.0e-148 530.4 661 48.9
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.9e-146 523.9 694 46.4
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 4.6e-145 519.2 515 55.0
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 6.0e-145 518.8 656 48.5
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.7e-144 517.3 693 46.2
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.1e-142 510.4 680 47.2
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 2.8e-134 483.4 547 51.4
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 9.0e-133 478.4 443 58.2
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-131 474.2 603 48.1
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.7e-129 466.8 671 44.3
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 4.3e-127 459.5 514 53.5
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 5.5e-122 442.6 690 41.3
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 2.2e-115 420.6 448 55.1
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.9e-115 420.2 592 42.9
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.9e-114 417.5 568 46.0
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 3.3e-111 406.8 494 48.8
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.2e-107 394.0 556 44.6
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 1.9e-106 391.0 722 37.8
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 5.1e-104 382.9 330 62.4
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 1.7e-102 377.9 687 38.3
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.5e-100 370.2 353 57.8
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 4.2e-90 336.7 270 67.4
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.2e-89 335.1 798 34.0
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.8e-85 321.2 680 36.8
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.3e-85 319.7 289 60.6
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 5.3e-85 319.7 284 58.1
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 3.8e-83 313.5 405 46.9
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.2e-68 265.4 291 49.1
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 5.9e-68 263.1 638 32.6
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.0e-64 250.4 420 42.4
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.4e-61 241.9 623 34.0
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 2.4e-61 241.1 262 54.2
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 2.0e-60 238.0 130 90.0
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-57 228.8 357 41.2
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.6e-49 200.7 210 53.8
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.6e-44 185.3 232 50.4
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.6e-44 183.7 714 28.0
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 2.5e-42 177.9 246 43.5
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.0e-27 129.4 166 47.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 3.3e-26 124.4 148 48.6
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.1e-21 109.4 88 62.5
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.8e-19 102.1 61 82.0
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.9e-18 98.6 92 58.7
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 9.6e-18 96.3 68 69.1
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 2.8e-17 94.7 104 52.9
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.5e-15 89.0 85 55.3
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.3e-14 85.9 107 42.1
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 1.7e-14 85.5 91 54.9
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 4.2e-13 80.9 127 38.6
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 2.7e-12 78.2 64 57.8
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 1.0e-11 76.3 91 45.1
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 1.8e-11 75.5 57 63.2
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-10 70.5 40 82.5
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 1.6e-09 68.9 45 64.4
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 1.4e-08 65.9 49 57.1
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.8e-08 65.5 89 43.8
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 1.8e-08 65.5 46 63.0
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 2.4e-08 65.1 83 49.4
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.3e-08 63.9 52 65.4
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 5.8e-07 60.5 189 22.8


User provided reference genes

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