Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1341.3 728 100.0
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1277.7 771 90.5
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1271.1 755 90.3
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1252.7 772 88.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1243.0 764 88.7
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 0.0e+00 1209.5 758 84.6
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 0.0e+00 1208.0 758 84.7
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1204.1 755 84.0
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1203.7 756 84.0
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1193.7 779 81.8
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1190.6 778 81.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 0.0e+00 1175.6 757 82.2
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 0.0e+00 1169.8 757 81.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 0.0e+00 1147.9 755 80.7
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 0.0e+00 1140.6 754 79.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 0.0e+00 1109.0 754 76.7
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1107.0 732 81.4
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1099.7 729 80.9
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.6e-308 1062.4 758 73.6
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.1e-256 888.6 778 61.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.7e-255 885.6 763 61.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 4.0e-251 871.7 760 61.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.2e-249 865.9 758 60.9
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 8.3e-249 864.0 762 61.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.5e-245 852.4 761 60.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 2.7e-244 849.0 762 59.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.4e-243 846.7 764 59.7
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.8e-243 846.3 767 59.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 4.4e-242 841.6 760 60.7
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 4.9e-241 838.2 768 59.0
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.2e-239 833.6 757 59.7
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 5.9e-239 831.2 757 58.4
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.3e-238 830.1 757 59.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 8.6e-238 827.4 768 58.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.5e-237 825.9 767 58.5
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 7.3e-237 824.3 757 58.9
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-235 820.5 762 58.1
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.4e-235 820.1 768 60.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.0e-235 818.5 773 57.1
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-234 817.0 756 58.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.7e-233 813.1 758 58.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 6.4e-233 811.2 758 57.7
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.2e-232 807.4 766 57.2
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 3.5e-231 805.4 762 56.3
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 4.6e-231 805.1 763 57.3
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.9e-230 802.0 809 55.4
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.6e-230 801.2 768 56.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 8.6e-230 800.8 786 58.9
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.1e-229 800.4 747 58.4
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.6e-229 798.1 756 56.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 3.6e-228 795.4 764 58.9
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.2e-224 782.3 730 58.9
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.2e-223 780.4 761 55.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.0e-223 779.6 710 59.0
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 6.0e-223 778.1 760 57.8
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.0e-222 777.3 762 55.2
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.7e-222 776.5 763 55.2
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.3e-221 772.3 737 56.7
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.3e-221 772.3 763 55.0
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.2e-220 770.4 763 54.1
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.1e-219 767.3 765 55.9
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.4e-219 766.9 763 54.4
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.8e-218 761.5 760 54.6
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 5.8e-218 761.5 718 57.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.8e-218 760.8 759 53.6
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.3e-217 760.4 774 54.1
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.7e-215 752.7 771 53.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.1e-212 743.0 759 55.1
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.1e-212 743.0 762 53.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.1e-212 743.0 764 51.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 4.7e-212 741.9 762 52.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 5.2e-211 738.4 759 52.3
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.7e-209 733.4 762 53.0
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.2e-209 733.0 680 59.1
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 4.1e-208 728.8 778 52.8
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.1e-205 720.7 784 50.6
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 3.3e-205 719.2 764 53.1
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.4e-203 713.0 552 68.8
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.9e-201 706.1 552 66.7
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 7.8e-199 698.0 796 49.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.1e-195 686.0 737 51.8
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.9e-193 679.5 768 50.1
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.2e-191 674.1 759 49.4
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.0e-190 669.5 548 64.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.9e-190 669.1 738 52.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.5e-189 667.2 546 64.5
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.1e-188 663.3 750 53.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.4e-187 659.8 548 64.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.4e-186 656.0 760 48.9
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.4e-185 651.7 543 63.0
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 6.2e-180 635.2 758 50.0
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 8.2e-180 634.8 756 46.3
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.1e-179 632.9 763 47.3
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 4.6e-175 619.0 547 59.6
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 3.0e-174 616.3 546 60.4
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 6.3e-172 608.6 636 51.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.7e-169 600.5 500 64.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 2.9e-169 599.7 529 59.7
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 6.5e-169 598.6 759 46.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 7.2e-168 595.1 759 46.6
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 4.3e-165 585.9 639 51.3
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 7.4e-165 585.1 577 54.2
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.2e-164 581.6 463 65.9
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.7e-162 575.1 530 59.6
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 6.5e-161 572.0 746 45.8
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.3e-147 525.8 529 53.7
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 3.8e-145 519.6 763 41.5
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.5e-144 516.9 614 46.9
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 8.0e-135 485.3 782 37.9
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 7.5e-133 478.8 506 52.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.9e-120 437.6 438 53.7
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.9e-116 423.7 333 65.2
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-107 395.2 326 64.1
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.0e-105 386.3 379 55.9
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.1e-104 385.2 286 67.5
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.1e-99 365.9 487 47.0
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.0e-97 362.1 285 66.0
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.7e-97 361.3 559 42.2
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.1e-94 350.5 809 30.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 4.1e-91 340.1 281 62.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 3.3e-88 330.5 272 65.4
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.4e-85 320.5 730 30.5
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.2e-77 295.4 228 66.7
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.6e-74 285.0 480 39.4
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.6e-69 267.7 755 27.4
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.1e-66 258.1 175 72.0
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.4e-62 245.4 216 58.3
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.8e-57 228.4 748 25.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.8e-47 194.5 357 33.6
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.9e-43 181.8 196 50.0
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 7.2e-43 179.9 136 68.4
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.2e-42 179.1 182 50.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 6.3e-39 166.8 183 56.3
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.2e-35 154.5 392 30.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-34 152.5 392 30.6
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.2e-31 141.7 180 42.2
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 7.7e-29 133.3 106 67.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.3e-23 113.2 85 68.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 3.1e-22 111.3 207 36.7
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.5e-21 107.8 135 43.0
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.2e-20 105.1 97 57.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 9.4e-19 99.8 80 63.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-16 92.4 76 61.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.8e-14 85.5 142 38.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.7e-13 81.6 164 36.6
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-12 78.2 108 37.0
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 1.3e-07 62.8 454 21.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 2.2e-07 62.0 89 41.6
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-07 61.2 161 28.0
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 4.1e-06 57.8 72 41.7


User provided reference genes

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