Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.8e-65 252.7 154 100.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.5e-62 242.3 154 97.4
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.7e-61 238.0 154 94.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 6.1e-61 237.7 154 94.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 6.3e-58 227.6 154 92.2
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.4e-51 204.9 156 82.1
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.0e-48 196.1 157 83.4
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 3.5e-48 195.3 161 81.4
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.6e-47 191.0 152 84.2
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.9e-46 189.5 155 81.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.3e-42 176.8 155 79.4
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.0e-31 139.0 165 66.1
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.3e-23 112.8 166 54.8
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 6.6e-23 111.3 117 64.1
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.3e-22 108.6 162 51.9
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.3e-21 107.1 106 66.0
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-21 107.1 103 66.0
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.3e-21 107.1 161 54.0
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.8e-21 105.9 110 63.6
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.8e-21 105.9 110 63.6
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.6e-21 105.5 95 69.5
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.8e-21 105.1 149 55.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.8e-21 105.1 127 63.8
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.2e-21 104.8 105 76.2
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 6.2e-21 104.8 105 76.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 8.1e-21 104.4 104 66.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 8.1e-21 104.4 104 66.3
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.1e-21 104.4 106 75.5
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 8.1e-21 104.4 105 76.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.4e-20 103.6 110 68.2
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.4e-20 103.6 103 66.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.8e-20 103.2 95 73.7
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.8e-20 103.2 94 68.1
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.8e-20 103.2 94 68.1
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 5.3e-20 101.7 161 51.6
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.3e-20 101.7 103 71.8
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.2e-19 100.5 104 74.0
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.2e-19 100.5 104 74.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-19 100.1 95 72.6
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.5e-19 100.1 105 71.4
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.0e-19 99.8 103 73.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.6e-19 99.4 106 71.7
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.6e-19 99.4 98 73.5
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 4.4e-19 98.6 96 67.7
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.4e-19 98.6 110 65.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 5.8e-19 98.2 104 73.1
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.3e-18 97.1 98 71.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.7e-18 96.7 104 73.1
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.2e-18 96.3 103 71.8
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.2e-18 96.3 100 74.0
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.9e-18 95.9 104 72.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.8e-18 95.5 127 56.7
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.9e-18 95.1 100 74.0
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 6.4e-18 94.7 95 72.6
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.4e-18 94.4 105 70.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 8.4e-18 94.4 103 70.9
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.4e-18 94.4 102 70.6
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.9e-17 93.2 120 66.7
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.9e-17 93.2 104 70.2
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.9e-17 93.2 97 74.2
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.4e-17 92.8 99 72.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.4e-17 92.8 99 72.7
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 2.4e-17 92.8 105 72.4
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.4e-17 92.8 105 72.4
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.2e-17 92.4 105 61.0
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.2e-17 92.4 99 74.7
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.2e-17 92.0 105 71.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.2e-17 92.0 105 71.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.2e-17 92.0 105 71.4
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 4.2e-17 92.0 126 57.1
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 5.4e-17 91.7 105 71.4
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 7.1e-17 91.3 105 63.8
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.1e-17 91.3 104 69.2
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 7.1e-17 91.3 100 72.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 9.3e-17 90.9 128 59.4
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 9.3e-17 90.9 103 70.9
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 9.3e-17 90.9 105 64.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.6e-16 90.1 99 72.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.6e-16 90.1 98 73.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.6e-16 90.1 109 68.8
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.6e-16 90.1 100 66.0
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.6e-16 90.1 150 52.7
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.6e-16 90.1 96 68.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.6e-16 90.1 120 65.8
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.1e-16 89.7 98 75.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 2.1e-16 89.7 100 71.0
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.1e-16 89.7 126 53.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.7e-16 89.4 99 72.7
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.7e-16 89.4 140 57.9
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 6.0e-16 88.2 105 69.5
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 6.0e-16 88.2 119 64.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.9e-16 87.8 100 70.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 7.9e-16 87.8 101 68.3
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 7.9e-16 87.8 99 72.7
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 7.9e-16 87.8 99 72.7
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.0e-15 87.4 125 58.4
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.7e-15 86.7 146 55.5
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.3e-15 86.3 173 47.4
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.9e-15 85.5 99 72.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 6.6e-15 84.7 156 52.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.7e-15 84.3 120 54.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.1e-14 84.0 143 57.3
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.9e-14 83.2 67 80.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.9e-14 83.2 105 65.7
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.9e-14 83.2 95 70.5
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.5e-14 82.8 112 62.5
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.3e-14 82.4 148 49.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.6e-14 81.6 103 66.0
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 9.6e-14 80.9 123 59.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.6e-13 80.1 113 64.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.6e-13 80.1 113 64.6
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.6e-13 80.1 99 68.7
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.6e-13 80.1 173 43.9
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.8e-13 79.3 100 68.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.2e-13 78.2 102 55.9
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 8.1e-13 77.8 101 66.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 8.1e-13 77.8 90 63.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.4e-12 77.0 99 66.7
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.4e-12 76.3 90 56.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.4e-12 76.3 172 44.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.4e-12 76.3 87 55.2
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.1e-12 75.9 172 43.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.0e-12 75.5 172 44.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.0e-12 75.5 120 52.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.3e-12 75.1 172 43.0
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 6.9e-12 74.7 143 49.7
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 6.9e-12 74.7 61 70.5
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 9.0e-12 74.3 171 46.8
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.0e-11 73.2 91 69.2
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.6e-11 72.8 95 57.9
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-10 70.5 172 42.4
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.9e-10 69.3 127 48.8
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 3.8e-10 68.9 88 58.0
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 4.9e-10 68.6 89 64.0
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.4e-09 66.2 97 53.6
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.4e-09 66.2 68 69.1
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.5e-09 65.1 68 69.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.1e-09 64.7 90 58.9
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 7.1e-09 64.7 100 54.0
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.1e-08 63.2 67 61.2
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.1e-08 63.2 122 53.3
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.0e-08 61.6 96 56.2
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.9e-07 58.9 67 64.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 6.7e-07 58.2 87 59.8
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 4.3e-06 55.5 92 53.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.6e-06 55.1 86 55.8
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 9.6e-06 54.3 120 43.3


User provided reference genes

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