Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 2.6e-39 164.9 79 100.0
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.4e-16 89.4 46 91.3
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.4e-16 89.4 46 91.3
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 1.8e-16 89.0 46 89.1
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 1.8e-16 89.0 46 89.1
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 4.0e-16 87.8 46 87.0
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 4.0e-16 87.8 46 87.0
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 4.0e-16 87.8 46 87.0
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 5.3e-16 87.4 46 87.0
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.5e-15 85.9 46 87.0
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 5.8e-15 84.0 46 82.6
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 5.8e-15 84.0 46 82.6
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 9.9e-15 83.2 46 87.0
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.3e-14 82.8 46 80.4
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.3e-14 82.8 46 80.4
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 2.2e-14 82.0 46 80.4
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 2.9e-14 81.6 49 77.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 2.9e-14 81.6 49 77.6
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 2.9e-14 81.6 47 87.2
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.1e-13 79.7 49 75.5
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.1e-13 79.7 49 75.5
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 8.7e-11 70.1 42 73.8
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 8.7e-11 70.1 39 74.4
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.5e-10 69.3 40 67.5
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.9e-10 68.9 42 61.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 7.4e-10 67.0 49 53.1
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 9.6e-10 66.6 41 63.4
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 9.6e-10 66.6 39 69.2
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.3e-09 66.2 50 52.0
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.3e-09 66.2 37 73.0
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-09 66.2 53 56.6
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.6e-09 65.9 40 65.0
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.6e-09 65.9 41 63.4
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.7e-09 64.7 50 50.0
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.8e-09 64.3 37 64.9
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 4.8e-09 64.3 37 64.9
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 4.8e-09 64.3 37 70.3
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 6.2e-09 63.9 40 65.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 8.1e-09 63.5 40 62.5
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 8.1e-09 63.5 39 61.5
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-08 63.2 37 62.2
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-08 63.2 38 60.5
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 1.4e-08 62.8 37 70.3
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.4e-08 62.8 58 53.4
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.4e-08 62.8 40 67.5
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.4e-08 62.8 40 67.5
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.4e-08 62.0 41 61.0
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 2.4e-08 62.0 40 67.5
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.4e-08 62.0 40 67.5
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.4e-08 62.0 39 61.5
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 3.1e-08 61.6 42 64.3
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 4.0e-08 61.2 41 63.4
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 5.3e-08 60.8 38 65.8
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 9.0e-08 60.1 40 60.0
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 9.0e-08 60.1 40 60.0
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.2e-07 59.7 37 62.2
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-07 59.7 39 66.7
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-07 59.7 39 66.7
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-07 59.7 39 66.7
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 1.5e-07 59.3 37 64.9
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.5e-07 59.3 42 57.1
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.5e-07 59.3 35 65.7
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.6e-07 58.5 37 62.2
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 2.6e-07 58.5 59 45.8
BcaC01g00581 Brassica carinata HOM05D007120 ORTHO05D008881 3.4e-07 58.2 46 65.2
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 3.4e-07 58.2 40 60.0
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.4e-07 58.2 56 51.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 5.8e-07 57.4 42 57.1
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 5.8e-07 57.4 43 60.5
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 7.6e-07 57.0 40 60.0
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 7.6e-07 57.0 37 56.8
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 9.9e-07 56.6 36 63.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 9.9e-07 56.6 41 56.1
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.3e-06 56.2 40 55.0
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.7e-06 55.8 36 61.1
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.7e-06 55.8 38 57.9
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 2.2e-06 55.5 40 55.0
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.2e-06 55.5 40 55.0
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.9e-06 55.1 40 52.5
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 2.9e-06 55.1 39 59.0
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 3.8e-06 54.7 40 60.0
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 6.4e-06 53.9 39 56.4
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 6.4e-06 53.9 35 60.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 8.4e-06 53.5 40 52.5
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 8.4e-06 53.5 32 65.6


User provided reference genes

Program Settings