Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.8e-84 315.1 194 100.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 5.9e-45 184.9 140 70.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.0e-44 184.1 138 70.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.0e-44 184.1 138 70.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-44 184.1 138 70.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-44 184.1 138 70.3
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.0e-44 184.1 138 70.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 6.6e-44 181.4 140 68.6
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 6.6e-44 181.4 140 68.6
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 6.6e-44 181.4 140 68.6
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-43 180.6 137 69.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.1e-43 180.6 137 69.3
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.8e-41 173.3 133 68.4
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 5.2e-41 171.8 133 67.7
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.2e-41 171.8 133 67.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 8.9e-41 171.0 133 66.2
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.8e-40 168.3 157 58.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.8e-40 168.3 133 64.7
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.2e-39 166.4 133 63.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.2e-39 166.4 133 63.9
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.1e-38 164.1 133 62.4
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-38 163.7 82 97.6
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 4.1e-38 162.2 133 63.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.7e-37 159.5 133 60.9
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 3.0e-36 156.0 133 59.4
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.5e-35 152.9 133 58.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.3e-35 152.5 133 57.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.3e-35 152.5 133 58.6
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 5.6e-35 151.8 133 57.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.3e-35 151.4 133 57.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 7.3e-35 151.4 133 57.1
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 7.3e-35 151.4 133 57.1
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 7.3e-35 151.4 133 57.9
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 9.5e-35 151.0 133 57.1
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.2e-34 150.6 133 58.6
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.2e-34 150.6 133 57.1
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.2e-34 150.6 133 57.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.2e-34 150.6 133 57.1
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.2e-34 150.6 133 57.1
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.6e-34 150.2 133 57.9
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.6e-34 150.2 133 56.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.6e-34 150.2 133 57.1
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.1e-34 149.8 133 57.1
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.1e-34 149.8 133 57.1
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.1e-34 149.8 133 56.4
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 2.1e-34 149.8 133 56.4
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.8e-34 149.4 133 57.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.6e-34 149.1 133 57.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.6e-34 149.1 133 56.4
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.7e-34 148.7 133 56.4
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.7e-34 148.7 133 57.1
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 4.7e-34 148.7 133 55.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 57.1
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 54.9
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 56.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 57.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.2e-34 148.3 133 55.6
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 8.1e-34 147.9 133 55.6
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 8.1e-34 147.9 133 55.6
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.1e-33 147.5 140 52.1
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.1e-33 147.5 140 52.1
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.1e-33 147.5 140 52.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.1e-33 147.5 133 54.9
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.4e-33 147.1 133 56.4
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.4e-33 147.1 133 57.1
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.4e-33 147.1 133 56.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-33 147.1 83 81.9
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.8e-33 146.7 133 55.6
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.8e-33 146.7 133 54.9
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.3e-33 146.4 133 54.9
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.3e-33 146.4 133 54.9
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.1e-33 146.0 133 55.6
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.0e-33 145.6 133 55.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 4.0e-33 145.6 133 55.6
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 5.2e-33 145.2 174 70.7
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.2e-33 145.2 133 54.1
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.2e-33 145.2 133 54.9
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 6.8e-33 144.8 83 80.7
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 8.9e-33 144.4 133 53.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 8.9e-33 144.4 133 54.9
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.2e-32 144.1 133 54.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.2e-32 144.1 133 54.9
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.5e-32 143.7 83 78.3
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.5e-32 143.7 150 51.3
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.0e-32 143.3 133 54.1
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.0e-32 143.3 133 54.1
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.6e-32 142.9 83 79.5
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 3.4e-32 142.5 133 55.6
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 3.4e-32 142.5 133 55.6
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 3.4e-32 142.5 137 54.7
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 4.4e-32 142.1 148 52.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.8e-32 141.7 83 78.3
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 7.5e-32 141.4 133 52.6
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.3e-31 140.6 83 77.1
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.3e-31 140.6 137 52.6
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.7e-31 140.2 83 77.1
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.7e-31 140.2 133 54.1
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.7e-31 140.2 83 79.5
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 3.7e-31 139.0 133 54.1
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 3.7e-31 139.0 133 53.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 4.9e-31 138.7 133 52.6
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 6.4e-31 138.3 83 74.7
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.1e-30 137.5 83 74.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.1e-30 137.5 83 77.1
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.1e-30 137.5 133 51.9
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.4e-30 137.1 83 75.9
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.9e-30 136.7 133 50.4
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.9e-30 136.7 137 51.1
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 5.4e-30 135.2 83 74.7
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 9.2e-30 134.4 122 56.6
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 9.2e-30 134.4 83 72.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 9.2e-30 134.4 133 51.9
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.2e-29 134.0 83 73.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.6e-29 133.7 152 46.7
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.1e-29 133.3 83 74.7
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.1e-29 133.3 83 74.7
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.1e-29 133.3 83 73.5
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 2.1e-29 133.3 83 72.3
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.7e-29 132.9 83 72.3
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.6e-29 132.1 83 72.3
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 6.0e-29 131.7 83 73.5
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 2.3e-28 129.8 83 68.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.5e-27 127.1 83 69.9
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.1e-26 121.3 82 65.9
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.2e-24 117.5 133 43.6
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.5e-24 117.1 114 55.3
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 3.5e-21 105.9 145 49.0
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-20 104.4 125 48.8
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-20 103.6 82 62.2
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.9e-20 102.4 95 58.9
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-19 99.8 65 70.8
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.3e-19 99.4 65 70.8
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 7.3e-19 98.2 86 54.7
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 4.7e-18 95.5 64 70.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-17 94.0 85 52.9
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.1e-17 92.8 83 51.8
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.9e-17 91.7 64 67.2
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.8e-16 88.6 82 52.4
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.7e-15 87.0 82 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 7.1e-14 81.6 82 48.8
C04p16170 Brassica napus HOM05D054695 ORTHO05D097982 1.6e-13 80.5 79 100.0
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 7.8e-13 78.2 61 70.5
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.7e-12 77.0 96 43.8
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 2.5e-11 73.2 102 46.1
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 5.6e-11 72.0 107 39.3
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 5.6e-11 72.0 90 38.9
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 6.2e-10 68.6 84 38.1
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.9e-07 59.7 55 54.5
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 8.4e-07 58.2 55 52.7
C04p16240 Brassica napus HOM05D054695 ORTHO05D099066 8.4e-07 58.2 99 75.8


User provided reference genes

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