Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-138 495.4 256 100.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-135 485.0 258 98.1
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.5e-125 451.4 258 91.9
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-124 449.1 258 91.9
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 7.2e-123 444.1 258 91.5
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 7.7e-117 424.1 254 89.4
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-111 405.6 245 89.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 6.7e-105 384.4 271 79.7
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-104 381.7 271 79.3
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-102 375.2 252 82.5
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-98 363.2 282 74.1
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-98 361.7 282 73.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-97 360.5 282 73.4
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-97 360.5 282 73.4
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.4e-97 360.1 282 73.8
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-97 359.4 282 73.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 4.4e-96 355.1 282 72.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.7e-95 353.2 282 72.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.7e-93 345.9 282 70.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.3e-92 343.6 282 70.2
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.9e-92 342.4 282 69.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.0e-92 341.7 282 69.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-91 340.5 255 76.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-88 327.4 282 67.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-87 325.1 282 67.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 4.9e-87 325.1 282 67.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-87 325.1 282 67.0
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.8e-86 323.2 286 66.4
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.7e-84 316.6 324 59.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 4.9e-79 298.5 280 60.0
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-78 297.4 279 60.2
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.4e-78 296.2 284 60.2
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.2e-78 295.8 280 59.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 9.2e-78 294.3 280 60.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 9.2e-78 294.3 280 60.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.3e-76 289.7 282 57.8
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.0e-76 289.3 282 58.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 5.0e-76 288.5 282 57.8
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 6.6e-76 288.1 282 57.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.9e-75 286.6 282 57.8
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.5e-75 286.2 282 58.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 4.3e-75 285.4 282 56.7
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 7.3e-75 284.6 253 68.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.3e-75 284.6 282 57.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.2e-74 283.9 282 57.8
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.2e-74 283.9 282 56.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 57.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 57.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-74 283.1 282 57.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.1e-74 283.1 282 56.0
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.8e-74 282.7 282 57.4
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.8e-74 282.7 282 57.8
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 3.6e-74 282.3 282 57.1
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 4.7e-74 282.0 282 56.4
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 6.2e-74 281.6 282 57.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.0e-74 281.2 282 57.1
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.1e-73 280.8 282 57.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.1e-73 280.8 278 57.9
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.4e-73 280.4 282 57.1
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.8e-73 280.0 279 57.3
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.8e-73 280.0 279 57.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.8e-73 280.0 282 56.7
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.3e-73 279.6 282 56.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.3e-73 279.6 282 56.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.0e-73 278.9 282 56.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 4.0e-73 278.9 279 57.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 5.2e-73 278.5 281 56.9
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.6e-72 276.2 279 57.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 4.4e-72 275.4 279 56.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 7.5e-72 274.6 253 62.1
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.7e-71 273.5 277 56.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.7e-71 273.5 285 55.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 4.9e-71 271.9 312 51.9
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.9e-71 271.9 282 55.3
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 4.9e-71 271.9 282 54.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 6.4e-71 271.6 255 60.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.4e-71 271.6 266 58.6
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 6.4e-71 271.6 279 55.9
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 8.3e-71 271.2 277 57.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.3e-71 271.2 255 60.0
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.3e-71 271.2 255 60.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.3e-71 271.2 255 60.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-70 270.8 279 55.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-70 270.8 282 55.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.4e-70 270.4 278 56.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.9e-70 270.0 255 60.4
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.9e-70 270.0 278 56.5
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.9e-70 270.0 281 54.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 4.1e-70 268.9 255 60.4
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 5.4e-70 268.5 278 56.5
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 5.4e-70 268.5 255 60.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.6e-69 266.9 279 54.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.6e-69 266.9 279 55.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.5e-69 265.8 282 54.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 4.6e-69 265.4 279 55.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.0e-68 264.2 282 54.3
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.3e-68 263.8 278 54.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.7e-68 263.5 286 52.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.0e-68 262.7 279 54.8
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.0e-68 262.7 277 54.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 3.0e-68 262.7 278 55.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 5.1e-68 261.9 282 53.5
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 5.1e-68 261.9 282 53.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 5.1e-68 261.9 278 54.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 5.1e-68 261.9 278 54.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.6e-68 261.5 295 51.5
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.1e-67 260.8 282 52.5
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-66 256.9 247 63.6
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 3.6e-66 255.8 289 52.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.1e-65 252.7 255 55.7
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-63 246.9 165 80.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.2e-63 246.5 252 57.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.4e-63 245.0 252 57.5
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 4.1e-62 242.3 274 53.3
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.2e-61 240.7 255 54.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 4.6e-61 238.8 274 51.8
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.0e-60 237.7 277 50.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.7e-60 236.9 341 44.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.6e-60 235.0 278 50.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 8.6e-60 234.6 293 52.6
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.1e-59 234.2 296 48.3
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.1e-59 234.2 276 49.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.9e-59 233.4 277 49.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.6e-59 231.9 277 50.2
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.1e-58 229.9 276 48.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.8e-57 226.9 347 42.4
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.4e-57 226.5 278 46.4
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.2e-56 224.2 279 49.5
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.0e-56 223.4 238 55.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-54 216.9 282 44.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.2e-54 216.1 262 48.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.1e-54 214.9 269 48.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.6e-53 213.8 252 51.2
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.3e-52 209.9 269 48.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.1e-51 207.6 162 67.3
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.1e-51 207.6 162 67.3
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 4.7e-50 202.2 275 45.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.2e-48 197.6 271 44.6
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.0e-48 196.8 277 43.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.6e-48 196.4 271 44.3
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.4e-48 196.1 272 45.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.7e-47 193.7 162 63.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.6e-45 187.2 285 41.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 6.0e-45 185.3 117 76.9
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.0e-44 184.5 280 41.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.3e-42 177.6 249 47.4
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.8e-41 173.7 243 44.9
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.3e-41 172.2 269 42.4
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.5e-35 154.1 118 69.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-35 154.1 116 64.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.5e-35 154.1 114 70.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 9.3e-30 134.8 160 53.1
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.9e-28 129.4 157 49.0
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 6.7e-28 128.6 83 84.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-27 127.5 77 80.5
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.8e-26 122.5 100 68.0
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-26 121.7 102 69.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-25 120.2 108 60.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-22 110.2 162 45.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.1e-22 108.6 103 54.4
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.1e-21 107.1 157 44.6
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 5.1e-20 102.4 267 30.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-17 94.0 52 94.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-17 93.6 52 92.3
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-17 93.6 52 92.3
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 5.3e-17 92.4 52 92.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.2e-16 91.3 69 66.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-16 90.1 52 90.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-15 88.2 50 90.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.9e-15 86.7 269 29.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.0e-15 85.9 59 72.9
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 6.5e-15 85.5 71 62.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.5e-14 83.6 72 56.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.5e-14 83.6 72 56.9
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.1e-13 80.5 68 60.3
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.7e-13 80.1 72 54.2
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.6e-13 79.7 72 55.6
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.0e-12 78.2 60 63.3
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.5e-11 74.3 51 72.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.5e-11 73.6 264 26.5
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 5.3e-09 65.9 80 48.8
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 4.5e-08 62.8 140 37.1
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.3e-07 61.2 34 91.2
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.2e-07 60.5 64 53.1
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-06 56.6 52 53.8


User provided reference genes

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