Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p15680 Brassica napus HOM05D000667 ORTHO05D003095 6.0e-48 193.7 91 100.0
A05p12110 Brassica napus HOM05D000667 ORTHO05D003095 4.0e-36 154.5 90 84.4
BraA05t20155Z Brassica rapa HOM05D000667 ORTHO05D003095 4.0e-36 154.5 90 84.4
A06p12160 Brassica napus HOM05D000667 ORTHO05D003095 3.4e-27 124.8 70 82.9
BcaC02g11428 Brassica carinata HOM05D000667 ORTHO05D003095 8.4e-26 120.2 56 100.0
BcaB02g06604 Brassica carinata HOM05D000667 ORTHO05D003095 9.7e-22 106.7 71 71.8
CARHR016720 Cardamine hirsuta HOM05D000667 ORTHO05D003095 2.8e-21 105.1 71 73.2
Sp1g14460 Schrenkiella parvula HOM05D000667 ORTHO05D003095 3.7e-21 104.8 71 73.2
AT1G16250 Arabidopsis thaliana HOM05D000667 ORTHO05D003095 1.1e-20 103.2 71 71.8
BcaB03g13046 Brassica carinata HOM05D001040 ORTHO05D002795 1.1e-20 103.2 72 69.4
Thhalv10007905m.g Eutrema salsugineum HOM05D000667 ORTHO05D003095 1.4e-20 102.8 71 70.4
AL1G28370 Arabidopsis lyrata HOM05D000667 ORTHO05D003095 3.1e-20 101.7 74 70.3
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 3.1e-20 101.7 84 61.9
A08p31390 Brassica napus HOM05D001040 ORTHO05D002795 2.6e-19 98.6 83 55.4
Carub.0001s1599 Capsella rubella HOM05D000667 ORTHO05D003095 2.6e-19 98.6 71 70.4
BraA08t35062Z Brassica rapa HOM05D001040 ORTHO05D002795 4.5e-19 97.8 71 64.8
C08p17400 Brassica napus HOM05D001040 ORTHO05D002795 1.0e-18 96.7 71 66.2
BolC8t49366H Brassica oleracea HOM05D001040 ORTHO05D002795 1.0e-18 96.7 71 66.2
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 1.7e-18 95.9 72 65.3
THA.LOC104812401 Tarenaya hassleriana HOM05D000667 ORTHO05D003095 2.9e-18 95.1 71 64.8
DCAR_026920 Daucus carota HOM05D000667 ORTHO05D003095 5.0e-18 94.4 64 68.8
Aa31LG7G770 Aethionema arabicum HOM05D000667 ORTHO05D003095 2.5e-17 92.0 68 64.7
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 9.3e-17 90.1 77 57.1
Manes.12G040400 Manihot esculenta HOM05D000667 ORTHO05D003095 2.1e-16 89.0 71 62.0
Nn4g25683 Nelumbo nucifera HOM05D000667 ORTHO05D003095 2.7e-16 88.6 64 64.1
Lj6A705G44 Lonicera japonica HOM05D000667 ORTHO05D003095 3.6e-16 88.2 63 63.5
CAN.G275.1 Capsicum annuum HOM05D000667 ORTHO05D003095 7.9e-16 87.0 70 61.4
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 1.8e-15 85.9 71 59.2
Actinidia24553 Actinidia chinensis HOM05D000667 ORTHO05D003095 2.3e-15 85.5 71 60.6
Duzib177G0493 Durio zibethinus HOM05D000667 ORTHO05D003095 3.0e-15 85.1 75 53.3
TAR636G3298 Trochodendron aralioides HOM05D000667 ORTHO05D003095 5.1e-15 84.3 62 62.9
Peaxi162Scf01347g00117 Petunia axillaris HOM05D000667 ORTHO05D003095 6.7e-15 84.0 63 61.9
PSO170G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 1.1e-14 83.2 66 54.5
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 1.5e-14 82.8 71 54.9
Gohir.D13G168200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 1.5e-14 82.8 71 54.9
Gorai.013G193900 Gossypium raimondii HOM05D000667 ORTHO05D003095 1.5e-14 82.8 71 54.9
Prupe.1G209000 Prunus persica HOM05D000667 ORTHO05D003095 1.5e-14 82.8 71 59.2
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 1.9e-14 82.4 71 59.2
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 1.9e-14 82.4 71 59.2
QL06p014826 Quercus lobata HOM05D000667 ORTHO05D003095 2.5e-14 82.0 62 59.7
FAN07G0487 Fragaria x ananassa HOM05D000667 ORTHO05D003095 4.3e-14 81.3 63 58.7
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 7.4e-14 80.5 62 61.3
Thecc.05G247000 Theobroma cacao HOM05D000667 ORTHO05D003095 7.4e-14 80.5 62 59.7
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 1.3e-13 79.7 62 59.7
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 2.8e-13 78.6 58 63.8
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 2.8e-13 78.6 62 59.7
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 3.7e-13 78.2 62 59.7
PSO357G0139 Papaver somniferum HOM05D000667 ORTHO05D003095 4.8e-13 77.8 66 51.5
Aqoxy5G02870 Aquilegia oxysepala HOM05D000667 ORTHO05D003095 8.2e-13 77.0 71 54.9
Sabra10G0003900 Salix brachista HOM05D000667 ORTHO05D003095 1.8e-12 75.9 67 56.7
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 1.8e-12 75.9 62 56.5
Potri.010G004500 Populus trichocarpa HOM05D000667 ORTHO05D003095 2.4e-12 75.5 66 57.6
Eucgr.H04146 Eucalyptus grandis HOM05D000667 ORTHO05D003095 6.9e-12 73.9 62 53.2
Eucgr.H04148 Eucalyptus grandis HOM05D000667 ORTHO05D003095 2.6e-11 72.0 58 55.2
Prupe.2G169600 Prunus persica HOM05D000667 ORTHO05D009057 1.7e-10 69.3 63 47.6
Ah.04g160420 Amaranthus hybridus HOM05D000667 ORTHO05D009057 3.8e-10 68.2 76 40.8
Glyma.07G071600 Glycine max HOM05D000667 ORTHO05D009057 8.5e-10 67.0 63 44.4
Thecc.01G360100 Theobroma cacao HOM05D000667 ORTHO05D009057 8.5e-10 67.0 63 44.4
C05p14400 Brassica napus HOM05D000667 ORTHO05D003095 1.4e-09 66.2 53 64.2
Cc02_g37910 Coffea canephora HOM05D000667 ORTHO05D009057 1.4e-09 66.2 66 42.4
HanXRQChr17g0561611 Helianthus annuus HOM05D000667 ORTHO05D009057 2.5e-09 65.5 60 46.7
AUR62004347 Chenopodium quinoa HOM05D000667 ORTHO05D009057 3.2e-09 65.1 67 43.3
Eucgr.E00146 Eucalyptus grandis HOM05D000667 ORTHO05D009057 3.2e-09 65.1 63 44.4
Eucgr.E00142 Eucalyptus grandis HOM05D000667 ORTHO05D009057 4.2e-09 64.7 63 42.9
Lj9A583T61 Lonicera japonica HOM05D000667 ORTHO05D009057 4.2e-09 64.7 63 44.4
Migut.B01745 Erythranthe guttata HOM05D000667 ORTHO05D009057 5.5e-09 64.3 63 41.3
Glyma.07G071500 Glycine max HOM05D000667 ORTHO05D009057 5.5e-09 64.3 63 41.3
Lsat_1_v5_gn_4_36160 Lactuca sativa HOM05D000667 ORTHO05D009057 5.5e-09 64.3 77 39.0
Oeu033970.1 Olea europaea HOM05D000667 ORTHO05D009057 7.2e-09 63.9 63 42.9
MSTRG.17261 Avicennia marina HOM05D000667 ORTHO05D009057 9.4e-09 63.5 63 41.3
MD01G1058200 Malus domestica HOM05D000667 ORTHO05D009057 1.2e-08 63.2 68 39.7
Mapoly0057s0100 Marchantia polymorpha HOM05D000667 ORTHO05D003095 1.6e-08 62.8 64 46.9
Nitab4.5_0008002g0010 Nicotiana tabacum HOM05D000667 ORTHO05D009057 1.6e-08 62.8 65 40.0
Pp3c7_3160 Physcomitrium patens HOM05D000667 ORTHO05D009057 1.6e-08 62.8 70 38.6
Duzib138G0506 Durio zibethinus HOM05D000667 ORTHO05D009057 2.1e-08 62.4 60 43.3
ECA234G4497 Erigeron canadensis HOM05D000667 ORTHO05D009057 2.7e-08 62.0 65 40.0
PGR042G2198 Punica granatum HOM05D000667 ORTHO05D009057 2.7e-08 62.0 57 47.4
GSVIVG01026912001 Vitis vinifera HOM05D000667 ORTHO05D009057 2.7e-08 62.0 63 42.9
AUR62022553 Chenopodium quinoa HOM05D000667 ORTHO05D009057 3.6e-08 61.6 67 41.8
Glyma.07G071400 Glycine max HOM05D000667 ORTHO05D009057 3.6e-08 61.6 63 42.9
Manes.01G257804 Manihot esculenta HOM05D000667 ORTHO05D009057 3.6e-08 61.6 63 41.3
arahy.Tifrunner.gnm1.ann1.03D6J4 Arachis hypogaea HOM05D000667 ORTHO05D009057 4.7e-08 61.2 65 40.0
arahy.Tifrunner.gnm1.ann1.I7X4PC Arachis hypogaea HOM05D000667 ORTHO05D009057 4.7e-08 61.2 65 40.0
EL10Ac1g00425 Beta vulgaris HOM05D000667 ORTHO05D009057 4.7e-08 61.2 63 44.4
CiPaw.01G060200 Carya illinoinensis HOM05D000667 ORTHO05D009057 4.7e-08 61.2 63 44.4
CAN.G78.56 Capsicum annuum HOM05D000667 ORTHO05D009057 6.1e-08 60.8 65 44.6
Phvul.010G098100 Phaseolus vulgaris HOM05D000667 ORTHO05D009057 6.1e-08 60.8 63 39.7
Potri.014G083200 Populus trichocarpa HOM05D000667 ORTHO05D009057 6.1e-08 60.8 63 42.9
Ciclev10020824m.g Citrus clementina HOM05D000667 ORTHO05D009057 7.9e-08 60.5 57 43.9
DCAR_025187 Daucus carota HOM05D000667 ORTHO05D009057 7.9e-08 60.5 63 38.1
Eucgr.E00152 Eucalyptus grandis HOM05D000667 ORTHO05D009057 7.9e-08 60.5 57 45.6
RcHm_v2.0_Chr1g0355111 Rosa chinensis HOM05D000667 ORTHO05D009057 7.9e-08 60.5 63 42.9
Atru.chr5.460 Acer truncatum HOM05D000667 ORTHO05D009057 1.0e-07 60.1 63 41.3
Rhsim07G0016000 Rhododendron simsii HOM05D000667 ORTHO05D009057 1.0e-07 60.1 65 41.5
Sabra14G0060400 Salix brachista HOM05D000667 ORTHO05D009057 1.0e-07 60.1 63 42.9
Aqoxy7G00324 Aquilegia oxysepala HOM05D000667 ORTHO05D009057 1.4e-07 59.7 65 43.1
QL08p049004 Quercus lobata HOM05D000667 ORTHO05D009057 1.4e-07 59.7 57 47.4
ATR0680G186 Amborella trichopoda HOM05D000667 ORTHO05D009057 1.8e-07 59.3 65 41.5
CBR_g63114 Chara braunii HOM05D000667 ORTHO05D002614 1.8e-07 59.3 63 38.1
FvH4_7g14191 Fragaria vesca HOM05D000667 ORTHO05D009057 1.8e-07 59.3 63 41.3
Lj3g0007984 Lotus japonicus HOM05D000667 ORTHO05D009057 1.8e-07 59.3 65 40.0
CANSAT56G3278 Cannabis sativa HOM05D000667 ORTHO05D009057 2.3e-07 58.9 63 41.3
FAN10G3555 Fragaria x ananassa HOM05D000667 ORTHO05D009057 2.3e-07 58.9 63 39.7
Sopen01g038330 Solanum pennellii HOM05D000667 ORTHO05D009057 2.3e-07 58.9 57 43.9
SGA_v2.0_scaffold95G28840 Striga asiatica HOM05D000667 ORTHO05D009057 2.3e-07 58.9 57 42.1
THA.LOC104802029 Tarenaya hassleriana HOM05D000667 ORTHO05D009057 2.3e-07 58.9 65 40.0
Dinv32473 Davidia involucrata HOM05D000667 ORTHO05D009057 3.0e-07 58.5 60 41.7
Sed0023464 Sechium edule HOM05D000667 ORTHO05D009057 3.0e-07 58.5 59 40.7
Hund27284 Selenicereus undatus HOM05D000667 ORTHO05D009057 3.0e-07 58.5 65 40.0
PGSC0003DMG400000165 Solanum tuberosum HOM05D000667 ORTHO05D009057 3.0e-07 58.5 57 43.9
COL.COLO4_12705 Corchorus olitorius HOM05D000667 ORTHO05D009057 3.9e-07 58.2 60 41.7
PSO782G4955 Papaver somniferum HOM05D000667 ORTHO05D009057 3.9e-07 58.2 56 44.6
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis HOM05D000667 ORTHO05D003095 5.1e-07 57.8 79 41.8
PSO478G0365 Papaver somniferum HOM05D000667 ORTHO05D009057 5.1e-07 57.8 56 44.6
Actinidia20913 Actinidia chinensis HOM05D000667 ORTHO05D009057 6.7e-07 57.4 60 40.0
CSS0019524 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D009057 6.7e-07 57.4 57 43.9
Hma1.2p1_0033F.1_g020190 Hydrangea macrophylla HOM05D000667 ORTHO05D009057 6.7e-07 57.4 57 42.1
Solyc01g094520.3 Solanum lycopersicum HOM05D000667 ORTHO05D009057 8.8e-07 57.0 57 43.9
Cpa.g.sc18.248 Carica papaya HOM05D000667 ORTHO05D009057 1.1e-06 56.6 57 43.9
Dinv43808 Davidia involucrata HOM05D000667 ORTHO05D009057 1.1e-06 56.6 60 41.7
Gohir.D12G112300 Gossypium hirsutum HOM05D000667 ORTHO05D009057 1.1e-06 56.6 60 38.3
Gorai.008G121700 Gossypium raimondii HOM05D000667 ORTHO05D009057 1.1e-06 56.6 60 38.3
CSS0022472 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D009057 1.5e-06 56.2 57 42.1
Lalb_Chr17g0339731 Lupinus albus HOM05D000667 ORTHO05D009057 1.5e-06 56.2 65 41.5
Nitab4.5_0005277g0020 Nicotiana tabacum HOM05D000667 ORTHO05D009057 1.5e-06 56.2 57 43.9
Os02g0114600 Oryza sativa ssp. japonica HOM05D000667 ORTHO05D009057 1.5e-06 56.2 64 39.1
Peaxi162Scf00020g00236 Petunia axillaris HOM05D000667 ORTHO05D009057 1.5e-06 56.2 57 43.9
Ca_23642_v3 Cicer arietinum L. HOM05D000667 ORTHO05D009057 2.6e-06 55.5 63 39.7
Nn8g40850 Nelumbo nucifera HOM05D000667 ORTHO05D009057 2.6e-06 55.5 58 44.8
MBI17_g33586_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D009057 3.3e-06 55.1 56 46.4
MBI17_g46811_MAGBIO Magnolia biondii HOM05D000667 ORTHO05D009057 3.3e-06 55.1 56 46.4
Psat4g155040 Pisum sativum HOM05D000667 ORTHO05D009057 3.3e-06 55.1 57 40.4
HPP92_016125 Vanilla planifolia HOM05D001337 ORTHO05D001281 3.3e-06 55.1 40 60.0
MD13G1136500 Malus domestica HOM05D003852 ORTHO05D003095 4.4e-06 54.7 49 55.1
Haze_15491 Corylus avellana HOM05D000667 ORTHO05D009057 7.4e-06 53.9 63 41.3
SEGI_03445 Sequoiadendron giganteum HOM05D000667 ORTHO05D009057 7.4e-06 53.9 65 38.5
Mapoly0002s0290 Marchantia polymorpha HOM05D000667 ORTHO05D000206 9.7e-06 53.5 62 37.1


User provided reference genes

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