Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 2.1e-160 568.9 281 100.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-160 568.9 281 100.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 2.1e-160 568.9 281 100.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 7.8e-155 550.4 281 96.4
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.0e-154 550.1 281 96.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-147 526.2 282 92.9
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.8e-143 512.7 281 89.7
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 5.4e-140 501.1 281 87.5
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.8e-136 488.8 282 85.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.8e-136 488.8 282 84.0
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 5.1e-130 468.0 283 81.3
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-128 462.6 267 84.6
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.4e-124 449.9 282 77.0
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 6.3e-112 407.9 281 70.8
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.8e-111 406.4 276 70.3
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.3e-109 400.2 219 88.1
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.3e-105 385.6 247 76.5
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.8e-96 355.9 227 77.1
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.2e-91 340.5 274 59.1
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.0e-90 335.9 258 61.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 4.4e-89 332.0 273 59.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 3.7e-88 328.9 283 58.3
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 4.8e-88 328.6 256 60.9
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 6.3e-88 328.2 299 55.5
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.1e-87 327.4 290 56.2
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.1e-87 327.4 274 56.9
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.4e-87 327.0 272 58.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.8e-87 326.6 274 57.3
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.4e-87 326.2 271 58.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.4e-87 326.2 276 58.3
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.4e-87 326.2 275 59.6
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.1e-87 325.9 260 60.0
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 5.3e-87 325.1 276 58.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 5.3e-87 325.1 288 57.3
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 7.0e-87 324.7 271 59.0
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 2.6e-86 322.8 272 58.5
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.5e-86 322.4 276 56.5
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 7.7e-86 321.2 280 57.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 7.7e-86 321.2 272 56.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 7.7e-86 321.2 254 60.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-85 320.5 268 59.7
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-85 320.5 262 59.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.7e-85 320.1 284 54.9
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.7e-85 320.1 272 57.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 2.2e-85 319.7 250 60.8
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.9e-85 319.3 269 58.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.9e-85 319.3 262 59.2
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.8e-85 318.9 293 54.6
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.0e-85 318.5 261 59.0
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.9e-84 316.6 267 57.3
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.2e-84 315.8 281 57.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.2e-84 315.5 273 56.8
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.5e-84 315.1 273 56.4
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.5e-84 315.1 273 56.8
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 9.4e-84 314.3 261 58.2
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.7e-83 312.8 270 55.9
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.7e-83 312.8 274 56.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.7e-83 312.8 289 54.3
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 2.7e-83 312.8 261 58.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.6e-83 312.4 286 54.9
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.6e-83 312.4 276 55.8
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.6e-83 312.4 274 56.6
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 6.1e-83 311.6 253 59.3
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 6.1e-83 311.6 261 57.9
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.1e-83 311.6 285 54.4
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.0e-82 310.8 260 57.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.8e-82 310.1 266 56.4
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.8e-82 310.1 271 56.1
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.0e-82 308.9 250 60.0
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 6.7e-82 308.1 272 56.6
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.2e-81 307.4 280 55.0
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.5e-81 307.0 285 54.0
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.0e-81 306.6 267 55.8
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.0e-81 306.6 273 53.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.0e-81 306.6 273 53.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.3e-81 305.8 290 54.5
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.4e-81 305.4 272 55.9
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 5.7e-81 305.1 269 54.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 7.5e-81 304.7 269 55.0
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.7e-81 304.3 277 55.2
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.3e-80 303.9 267 55.1
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.7e-80 302.4 269 55.0
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 6.3e-80 301.6 269 55.0
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 6.3e-80 301.6 286 53.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.4e-79 300.4 285 53.7
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.4e-79 300.4 282 53.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.8e-79 300.1 282 53.5
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.1e-79 298.9 272 55.1
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 9.1e-79 297.7 272 55.1
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-78 297.4 244 59.0
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.9e-78 295.0 256 55.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 5.0e-77 292.0 269 54.3
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.1e-76 290.8 273 52.7
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.1e-76 290.8 244 58.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.1e-75 286.6 286 49.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 3.6e-75 285.8 277 53.1
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.7e-75 285.4 272 53.7
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.0e-74 284.3 286 49.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.8e-74 281.6 286 51.7
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 2.6e-73 279.6 276 53.3
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 6.3e-72 275.0 273 51.6
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.8e-71 273.5 350 42.9
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.6e-70 270.4 232 57.8
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.9e-70 268.5 217 59.0
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.7e-69 266.9 218 59.2
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 3.8e-69 265.8 216 59.3
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 3.8e-69 265.8 280 46.1
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 7.2e-68 261.5 267 46.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.5e-68 261.2 207 60.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 3.6e-67 259.2 223 57.0
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.0e-65 253.4 264 50.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 3.4e-65 252.7 265 45.7
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 6.3e-64 248.4 218 54.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.1e-59 233.4 213 54.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.0e-57 226.9 242 49.2
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.8e-55 220.3 212 52.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.4e-55 218.8 261 44.8
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 2.3e-53 213.4 205 48.3
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.0e-49 200.3 267 41.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.6e-49 199.9 274 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.0e-46 190.3 257 42.4
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 2.7e-46 189.9 145 64.1
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.1e-44 184.5 242 40.9
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 5.1e-37 159.1 180 48.3
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.8e-35 153.3 256 35.9
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.2e-30 137.9 216 35.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 9.6e-28 128.3 119 52.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.6e-27 127.5 125 47.2
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 9.3e-23 111.7 167 40.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.5e-20 103.6 110 51.8
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.5e-17 92.8 57 82.5
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 6.0e-14 82.4 154 29.9
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 8.7e-13 78.6 68 52.9
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 9.6e-12 75.1 84 44.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.6e-11 74.3 55 58.2
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.4e-10 70.5 45 64.4
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.1e-10 70.1 106 37.7


User provided reference genes

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