Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 5.4e-47 190.7 96 100.0
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 4.6e-14 81.3 45 91.1
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.0e-13 80.1 45 88.9
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 3.0e-13 78.6 45 88.9
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 3.0e-13 78.6 45 88.9
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.5e-12 76.3 45 86.7
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.5e-12 76.3 45 86.7
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.5e-12 76.3 44 84.1
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 1.9e-12 75.9 42 88.1
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 4.3e-12 74.7 44 84.1
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.6e-11 72.8 45 80.0
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 1.6e-11 72.8 41 90.2
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.6e-11 72.8 41 90.2
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.6e-11 72.8 41 90.2
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 8.1e-11 70.5 42 88.1
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.1e-10 70.1 50 78.0
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.4e-10 69.7 42 85.7
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.4e-10 69.7 42 85.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.4e-10 68.9 48 72.9
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 4.0e-10 68.2 41 85.4
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 4.0e-10 68.2 48 75.0
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 5.2e-10 67.8 47 72.3
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 5.2e-10 67.8 48 72.9
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 5.2e-10 67.8 48 72.9
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 5.2e-10 67.8 41 85.4
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 6.8e-10 67.4 41 82.9
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 6.8e-10 67.4 42 85.7
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 8.9e-10 67.0 48 70.8
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 8.9e-10 67.0 48 70.8
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.2e-09 66.6 51 68.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.5e-09 66.2 51 66.7
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.5e-09 66.2 42 81.0
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.5e-09 66.2 51 66.7
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.5e-09 66.2 51 66.7
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.5e-09 66.2 48 72.9
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 2.0e-09 65.9 42 81.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 2.0e-09 65.9 42 81.0
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.6e-09 65.5 48 70.8
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 2.6e-09 65.5 51 66.7
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 2.6e-09 65.5 41 80.5
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 2.6e-09 65.5 48 70.8
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.6e-09 65.5 47 70.2
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 2.6e-09 65.5 43 79.1
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 3.4e-09 65.1 42 81.0
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 4.4e-09 64.7 42 78.6
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 5.8e-09 64.3 41 80.5
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 5.8e-09 64.3 48 68.8
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 5.8e-09 64.3 45 77.8
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 7.6e-09 63.9 42 81.0
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 9.9e-09 63.5 42 81.0
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 9.9e-09 63.5 42 78.6
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.3e-08 63.2 45 73.3
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 1.3e-08 63.2 42 78.6
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.7e-08 62.8 41 78.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 2.2e-08 62.4 45 73.3
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 3.8e-08 61.6 42 76.2
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 4.9e-08 61.2 45 71.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 4.9e-08 61.2 45 71.1
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.9e-08 61.2 42 73.8
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.9e-08 61.2 42 73.8
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 6.4e-08 60.8 38 81.6
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.4e-08 60.5 42 76.2
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.4e-08 60.5 42 73.8
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 8.4e-08 60.5 42 78.6
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 8.4e-08 60.5 42 73.8
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 8.4e-08 60.5 42 73.8
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 8.4e-08 60.5 41 75.6
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.1e-07 60.1 45 68.9
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.4e-07 59.7 42 76.2
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.4e-07 59.7 41 75.6
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.9e-07 59.3 42 76.2
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.9e-07 59.3 39 71.8
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-07 59.3 39 71.8
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-07 59.3 39 71.8
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-07 59.3 39 71.8
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.9e-07 59.3 39 71.8
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.9e-07 59.3 48 66.7
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.9e-07 59.3 42 73.8
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 2.4e-07 58.9 37 81.1
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.2e-07 58.5 36 75.0
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.2e-07 58.2 42 76.2
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 9.3e-07 57.0 37 81.1
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.6e-06 56.2 38 73.7
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 2.7e-06 55.5 34 82.4
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 3.5e-06 55.1 37 75.7
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 6.0e-06 54.3 42 69.0
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 7.8e-06 53.9 39 71.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 7.8e-06 53.9 38 71.1
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 7.8e-06 53.9 57 54.4


User provided reference genes

Program Settings