Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 2.8e-140 501.9 251 100.0
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.5e-138 495.0 251 98.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 5.7e-133 477.6 251 95.6
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 5.7e-133 477.6 251 95.6
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.7e-127 458.0 255 92.2
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 2.3e-126 455.7 255 91.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 5.8e-125 451.1 255 89.4
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 4.9e-124 448.0 255 89.0
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 5.4e-123 444.5 255 88.6
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 7.8e-122 440.7 255 87.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 3.3e-120 435.3 255 86.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 4.7e-119 431.4 255 85.9
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.8e-118 429.5 252 86.9
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.4e-117 424.9 254 86.2
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 4.4e-117 424.9 252 85.7
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 4.4e-117 424.9 252 85.7
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.7e-114 415.6 252 83.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.3e-112 408.7 255 80.0
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.9e-104 382.9 256 76.6
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.9e-96 356.3 241 72.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.2e-93 347.1 252 68.3
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.3e-92 343.6 251 66.9
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-91 340.5 247 67.2
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.4e-91 340.1 243 66.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.4e-91 338.2 249 67.1
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 9.3e-91 337.4 237 70.9
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.2e-90 337.0 226 70.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.1e-90 336.3 235 67.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.6e-90 335.1 226 77.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 4.6e-90 335.1 249 67.1
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 204 73.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.0e-89 332.4 206 73.8
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 8.7e-89 330.9 203 74.4
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 8.7e-89 330.9 251 63.7
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 8.7e-89 330.9 212 72.6
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.9e-88 329.7 217 70.5
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.9e-88 329.7 249 65.1
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 249 65.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 249 65.1
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.5e-88 329.3 251 64.5
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.3e-88 328.9 250 65.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 4.3e-88 328.6 249 65.9
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-87 327.0 248 64.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.6e-87 326.6 246 63.8
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.1e-87 326.2 206 72.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.8e-87 325.9 205 72.2
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.6e-87 325.5 250 63.6
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.6e-87 325.5 250 63.6
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.8e-87 325.1 204 73.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 4.8e-87 325.1 203 73.4
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 8.1e-87 324.3 246 64.2
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 8.1e-87 324.3 231 66.7
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 8.1e-87 324.3 206 71.4
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-86 323.9 250 63.2
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.1e-86 323.9 231 67.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.4e-86 323.6 215 69.3
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.4e-86 323.6 241 66.4
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.4e-86 323.6 253 65.2
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.4e-86 322.8 205 71.7
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.4e-86 322.8 205 71.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.4e-86 322.8 206 71.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 3.1e-86 322.4 247 63.6
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 3.1e-86 322.4 202 72.8
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.0e-86 322.0 206 72.8
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 6.9e-86 321.2 247 65.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 6.9e-86 321.2 256 63.3
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 9.0e-86 320.9 243 64.2
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 9.0e-86 320.9 247 63.2
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.2e-85 320.5 203 72.4
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.2e-85 320.5 248 63.3
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.0e-85 319.7 247 62.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.3e-84 317.0 249 62.7
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.3e-84 317.0 233 65.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.3e-84 317.0 246 62.6
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.2e-84 316.2 251 62.5
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.2e-84 316.2 249 62.2
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 3.8e-84 315.5 230 65.2
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 4.9e-84 315.1 244 62.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 6.4e-84 314.7 249 63.1
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 8.4e-84 314.3 252 62.7
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 8.4e-84 314.3 234 64.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.4e-83 313.5 222 70.3
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 3.2e-83 312.4 202 70.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.2e-83 312.4 256 60.5
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.2e-83 312.4 248 62.5
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 3.2e-83 312.4 250 62.8
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 5.4e-83 311.6 202 68.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 5.4e-83 311.6 247 61.5
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 9.3e-83 310.8 206 68.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 3.5e-82 308.9 248 61.3
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.5e-82 308.9 250 63.2
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.0e-81 307.4 238 63.4
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.3e-81 307.0 203 69.5
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.3e-81 306.2 251 59.4
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.0e-81 305.8 248 60.5
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.0e-81 305.8 251 59.4
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 3.9e-81 305.4 213 66.7
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.3e-80 302.4 236 63.1
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.1e-79 297.7 296 52.7
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.8e-78 296.6 201 66.7
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.4e-78 296.2 262 58.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.0e-77 293.1 227 61.7
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 3.8e-76 288.9 172 76.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.1e-75 287.3 317 47.9
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.6e-74 283.5 250 59.2
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 4.6e-74 282.0 251 54.2
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.6e-71 273.5 202 62.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 3.7e-71 272.3 249 58.2
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.5e-67 259.6 158 77.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-60 237.3 154 77.3
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 5.0e-60 235.3 136 79.4
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.5e-59 233.0 284 47.2
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 7.2e-59 231.5 319 44.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 1.4e-57 227.3 169 70.4
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.3e-55 220.7 242 45.9
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 2.2e-55 219.9 184 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 3.7e-55 219.2 189 51.9
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-52 210.7 200 55.0
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.7e-50 202.2 146 61.6
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 6.1e-50 201.8 119 79.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 4.1e-46 189.1 190 43.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 6.1e-42 175.3 106 75.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.1e-40 171.0 99 81.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.0e-40 170.2 99 81.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.3e-39 167.5 246 39.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 7.0e-38 161.8 151 58.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.7e-37 159.8 186 51.6
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.5e-37 159.5 99 73.7
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.7e-36 157.1 147 53.1
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.2e-34 151.0 97 72.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 3.6e-34 149.4 87 82.8
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.0e-29 133.7 69 94.2
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.0e-29 133.7 92 76.1
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.7e-29 133.3 89 77.5
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.7e-29 133.3 145 51.0
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 5.9e-29 132.1 72 90.3
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 5.9e-29 132.1 72 90.3
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.0e-28 131.3 88 77.3
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.3e-28 131.0 84 66.7
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 8.8e-25 118.2 101 52.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.4e-24 116.3 203 32.5
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 6.3e-23 112.1 80 63.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 6.6e-20 102.1 102 52.9
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.5e-16 90.9 82 58.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.4e-16 89.7 44 97.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.4e-16 89.7 44 97.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.9e-15 85.9 176 28.4
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 9.2e-14 81.6 117 29.1
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 3.0e-12 76.6 55 70.9
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.0e-12 76.6 48 72.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 6.6e-12 75.5 100 44.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 8.6e-12 75.1 51 62.7
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-11 74.3 56 69.6
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 5.6e-11 72.4 35 97.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 5.6e-11 72.4 35 97.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.8e-10 70.1 35 94.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.1e-09 66.6 42 73.8
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 6.8e-09 65.5 59 49.2
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 1.7e-07 60.8 34 82.4
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 2.9e-07 60.1 45 57.8


User provided reference genes

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