Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 7.4e-104 380.6 195 100.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 1.7e-79 299.7 164 95.1
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.6e-48 196.1 100 99.0
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 9.6e-27 124.4 233 43.3
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 5.4e-22 108.6 170 49.4
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 6.4e-15 85.1 159 42.1
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.1e-10 70.1 121 43.8
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.1e-10 70.1 121 43.8
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 2.1e-10 70.1 121 43.8
BcaC08g47562 Brassica carinata HOM05D002960 ORTHO05D003632 2.8e-10 69.7 121 43.8
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-09 67.8 82 57.3
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-09 67.8 82 57.3
BcaC08g45276 Brassica carinata HOM05D002960 ORTHO05D003632 1.8e-09 67.0 121 42.1
A07p26400 Brassica napus HOM05D002960 ORTHO05D003632 1.8e-09 67.0 121 42.1
C06p28790 Brassica napus HOM05D002960 ORTHO05D003632 1.8e-09 67.0 121 42.1
BraA07t30284Z Brassica rapa HOM05D002960 ORTHO05D003632 1.8e-09 67.0 121 42.1
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 5.3e-09 65.5 82 56.1
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 5.3e-09 65.5 82 56.1
BolC6t38049H Brassica oleracea HOM05D002960 ORTHO05D003632 5.3e-09 65.5 121 41.3
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 5.3e-09 65.5 82 56.1
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 5.3e-09 65.5 82 56.1
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 6.9e-09 65.1 40 90.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.2e-08 64.3 40 90.0
Thhalv10018223m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 1.2e-08 64.3 121 42.1
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.5e-08 63.9 70 55.7
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.0e-08 63.5 84 53.6
Thecc.03G185900 Theobroma cacao HOM05D002960 ORTHO05D003632 2.6e-08 63.2 121 41.3
Aa31LG4G250 Aethionema arabicum HOM05D002960 ORTHO05D003632 3.4e-08 62.8 121 41.3
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 3.4e-08 62.8 84 53.6
Manes.06G153311 Manihot esculenta HOM05D002960 ORTHO05D003632 3.4e-08 62.8 121 41.3
Manes.14G021200 Manihot esculenta HOM05D002960 ORTHO05D003632 3.4e-08 62.8 121 41.3
THA.LOC104811944 Tarenaya hassleriana HOM05D002960 ORTHO05D003632 5.8e-08 62.0 121 40.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 7.6e-08 61.6 82 52.4
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 7.6e-08 61.6 40 85.0
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 7.6e-08 61.6 82 52.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 7.6e-08 61.6 82 52.4
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 7.6e-08 61.6 86 48.8
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 7.6e-08 61.6 86 51.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 7.6e-08 61.6 86 51.2
AUR62021103 Chenopodium quinoa HOM05D002960 ORTHO05D003632 1.0e-07 61.2 84 48.8
AUR62031437 Chenopodium quinoa HOM05D002960 ORTHO05D003632 1.0e-07 61.2 84 48.8
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.0e-07 61.2 82 52.4
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.3e-07 60.8 81 51.9
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-07 60.8 40 82.5
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-07 60.8 40 82.5
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.3e-07 60.8 40 82.5
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-07 60.8 55 63.6
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 85.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 1.7e-07 60.5 40 82.5
Hund04797 Selenicereus undatus HOM05D002960 ORTHO05D003632 1.7e-07 60.5 122 41.0
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 2.2e-07 60.1 84 51.2
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
Gohir.A12G253400 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.2e-07 60.1 121 40.5
Gohir.D12G255700 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.2e-07 60.1 121 40.5
Gorai.008G273800 Gossypium raimondii HOM05D002960 ORTHO05D003632 2.2e-07 60.1 121 40.5
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 82.5
PGR042G1381 Punica granatum HOM05D002960 ORTHO05D003632 2.2e-07 60.1 119 39.5
Hund11709 Selenicereus undatus HOM05D002960 ORTHO05D003632 2.2e-07 60.1 122 41.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.2e-07 60.1 40 80.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 80.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 82.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 82.5
Ciclev10030891m.g Citrus clementina HOM05D002960 ORTHO05D003632 2.9e-07 59.7 121 39.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 82.5
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 82.5
Sabra17G0124100 Salix brachista HOM05D002960 ORTHO05D003632 2.9e-07 59.7 121 39.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.9e-07 59.7 40 80.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.9e-07 59.7 39 84.6
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.8e-07 59.3 40 82.5
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 3.8e-07 59.3 40 77.5
Potri.017G148800 Populus trichocarpa HOM05D002960 ORTHO05D003632 3.8e-07 59.3 119 41.2
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.8e-07 59.3 40 80.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 3.8e-07 59.3 40 80.0
Sc13g0009270 Simmondsia chinensis HOM05D002960 ORTHO05D003632 3.8e-07 59.3 121 38.8
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 80.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 4.9e-07 58.9 83 48.2
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 4.9e-07 58.9 44 75.0
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.9e-07 58.9 82 50.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 80.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 80.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 80.0
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 80.0
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 82.5
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.9e-07 58.9 40 77.5
TWI14G0129 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 4.9e-07 58.9 121 38.0
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 6.5e-07 58.5 40 82.5
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 6.5e-07 58.5 82 48.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 6.5e-07 58.5 40 77.5
Ca_02287_v3 Cicer arietinum L. HOM05D002960 ORTHO05D003632 6.5e-07 58.5 121 39.7
Hma1.2p1_1713F.1_g298870 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 6.5e-07 58.5 121 39.7
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 6.5e-07 58.5 40 77.5
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 6.5e-07 58.5 40 77.5
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 6.5e-07 58.5 40 77.5
Psat1g137760 Pisum sativum HOM05D002960 ORTHO05D003632 6.5e-07 58.5 121 39.7
EL10Ac3g05404 Beta vulgaris HOM05D002960 ORTHO05D003632 8.4e-07 58.2 122 39.3
CSS0002001 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 8.4e-07 58.2 119 37.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.4e-07 58.2 39 82.1
Dinv35266 Davidia involucrata HOM05D002960 ORTHO05D003632 8.4e-07 58.2 121 41.3
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 8.4e-07 58.2 39 82.1
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 8.4e-07 58.2 40 82.5
MD07G1280100 Malus domestica HOM05D002960 ORTHO05D003632 8.4e-07 58.2 121 38.8
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 8.4e-07 58.2 84 48.8
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 8.4e-07 58.2 40 77.5
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 8.4e-07 58.2 40 77.5
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 8.4e-07 58.2 40 77.5
Potri.004G072200 Populus trichocarpa HOM05D002960 ORTHO05D003632 8.4e-07 58.2 121 41.3
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 8.4e-07 58.2 40 80.0
Sabra04G0047600 Salix brachista HOM05D002960 ORTHO05D003632 8.4e-07 58.2 121 41.3
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 8.4e-07 58.2 82 48.8
TWI39G0419 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 8.4e-07 58.2 121 39.7
Ah.05g171480 Amaranthus hybridus HOM05D002960 ORTHO05D003632 1.1e-06 57.8 122 41.0
Ah.15g089770 Amaranthus hybridus HOM05D002960 ORTHO05D003632 1.1e-06 57.8 122 41.0
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-06 57.4 40 77.5
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-06 57.4 40 77.5
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.4e-06 57.4 40 77.5
TPR.G20789 Trifolium pratense HOM05D002960 ORTHO05D003632 1.4e-06 57.4 121 38.8
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.9e-06 57.0 40 75.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.9e-06 57.0 40 77.5
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 2.5e-06 56.6 85 47.1
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 2.5e-06 56.6 85 47.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.5e-06 56.6 40 75.0
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 2.5e-06 56.6 40 75.0
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.5e-06 56.6 39 79.5
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.5e-06 56.6 40 77.5
AL2G41600 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
AT1G79940 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
Carub.0002s2756 Capsella rubella HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
CARHR074540 Cardamine hirsuta HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
Cfa019929 Carpinus fangiana HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
CiPaw.03G199900 Carya illinoinensis HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
COL.COLO4_30293 Corchorus olitorius HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
Haze_05396 Corylus avellana HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
DCAR_008897 Daucus carota HOM05D002960 ORTHO05D003632 3.2e-06 56.2 119 39.5
Duzib205G1208 Durio zibethinus HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
Eucgr.A00001 Eucalyptus grandis HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 3.2e-06 56.2 40 75.0
Sp5g35840 Schrenkiella parvula HOM05D002960 ORTHO05D003632 3.2e-06 56.2 49 65.3
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 3.2e-06 56.2 40 75.0
Atru.chr8.1225 Acer truncatum HOM05D002960 ORTHO05D003632 4.2e-06 55.8 132 39.4
ATR0564G109 Amborella trichopoda HOM05D002960 ORTHO05D003632 4.2e-06 55.8 129 36.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.2e-06 55.8 40 72.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 4.2e-06 55.8 30 90.0
Lalb_Chr08g0232801 Lupinus albus HOM05D002960 ORTHO05D003632 4.2e-06 55.8 121 38.0
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 4.2e-06 55.8 40 72.5
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.2e-06 55.8 39 76.9
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.5e-06 55.5 40 72.5
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 5.5e-06 55.5 40 75.0
Dinv09614 Davidia involucrata HOM05D002960 ORTHO05D003632 5.5e-06 55.5 121 37.2
Prupe.2G302300 Prunus persica HOM05D002960 ORTHO05D003632 5.5e-06 55.5 121 38.8
CANSAT11G1379 Cannabis sativa HOM05D002960 ORTHO05D003632 7.1e-06 55.1 121 37.2
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 7.1e-06 55.1 40 72.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 7.1e-06 55.1 40 75.0
Cfa019431 Carpinus fangiana HOM05D002960 ORTHO05D003632 9.3e-06 54.7 49 63.3
CiPaw.04G140400 Carya illinoinensis HOM05D002960 ORTHO05D003632 9.3e-06 54.7 49 63.3
CsaV3_3G017580 Cucumis sativus L. HOM05D002960 ORTHO05D003632 9.3e-06 54.7 138 38.4
DCAR_020274 Daucus carota HOM05D002960 ORTHO05D003632 9.3e-06 54.7 119 38.7
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 9.3e-06 54.7 40 75.0


User provided reference genes

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